A DSL for data-driven computational pipelines

Nextflow Tower system

A modular Hi-C mapping pipeline

A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets

VSCode extension to lint , correct and format groovy and Jenkinsfile

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Params validation plugin for Nextflow pipelines

Experimental features for Nextflow

On-demand containers provisioning service

BACTpipe: An assembly and annotation pipeline for bacterial genomics

Fast RNAseq pipeline

Automatically source dotenv files into your Nextflow scope

Implement weblog plugin for Nextflow

Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data

This pipeline has moved! Please see:

Linguistic enrichment pipeline for historical dutch, as used in the Nederlab project

Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles

Docker based Multiple sequence aligners benchmark prototype

Configuration files to kickstart new Nextflow pipelines at JAX