#

exome-pipeline

Here are 5 public repositories matching this topic...

ESR-NZ / human_genomics_pipeline

A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

pipeline genomics exome-pipeline illumina nvidia-gpu cohort-analysis gatk4 snakemake-pipeline gatk-bestpractices nvidia-clara-parabricks

Updated Jan 13, 2023
Python

SciLifeLab / NGI-ExoSeq

This pipeline has moved! Please see:

nextflow bioinformatics-pipeline exome-pipeline bioinformatics-analysis exome-sequencing

Updated Apr 18, 2018
Groovy

Bohdan-Khomtchouk / NGStoolkit

One-stop shop for one-click NGS analyses from the command-line

bash bioinformatics ngs computational-biology next-generation-sequencing shell-script chip-seq bash-script exome-pipeline rna-seq-analysis methyl-seq

Updated Oct 12, 2017
Shell

drveera / exomepipe

A pipeline for variant calling of Exome using GATK best practice workflow

gatk bioinformatics-pipeline exome-pipeline

Updated Mar 16, 2017
Makefile

lucianhu / Masterarbeit

Leveraging WES short reads for PAN-EXOME creation and analysis.

ngs exome-pipeline exome ngs-analysis exome-sequencing ngs-pipeline pangenome pangenomic-analysis pangenome-pipeline pangenome-graph

Updated Nov 6, 2024
WDL

Improve this page

Add a description, image, and links to the exome-pipeline topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the exome-pipeline topic, visit your repo's landing page and select "manage topics."