Package for fetching metadata and downloading data from SRA/ENA/GEO
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Updated
Oct 25, 2024 - Python
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ncbi-sra
Here are 11 public repositories matching this topic...
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
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Mar 30, 2020 - Python
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
python
bioinformatics
rna-seq
conda
bioinformatics-pipeline
bioconda
bioinformatics-analysis
rna-seq-pipeline
ncbi-sra
rna-seq-workflows
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Jun 4, 2021 - Python
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
bioinformatics
bioinformatics-pipeline
phylogenetics
orthology
homology
ncbi-sra
gene-sequence-retrieval
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Apr 2, 2021 - Python
Extract metadata from biosamples in NCBI
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Updated
Apr 12, 2021 - Python
A tool to prepare files and run/monitor programmatic submissions to NCBI
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Mar 5, 2024 - Python
fast utils for fetch and dump NCBI SRA archive raw data
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May 25, 2023 - Python
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
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Jul 17, 2024 - Python
tair id to pubmed links for articls, genes, annotations, locus tag
pubmed
genome-annotation
ncbi
genome-analysis
ncbi-database
tair
topic-analysis
ncbi-sra
tair3
pubmed-literature
literature-modelling
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Aug 21, 2024 - Python
frequency of high level ranks in sequence databases
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Oct 27, 2024 - Python
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