A pipeline to investigate horizontal gene transfer from NGS data

A simple fastp-MultiQC nextflow pipeline

Report summary statistics relating to quality of bam files with Nextflow

This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.

This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.

RNAseq from fastq reads to gene counts/quantification

Using Quarto within Nextflow to make a MultiQC report

Nextflow FastQC & MultiQC pipeline.