A SingleCell RNASeq pre-processing snakemake workflow

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

A miniature example of a MultiQC plugin.

AlphaFold-based Protein Analysis Pipeline

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC

Map and post-process your bams for SNP calling

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

Snakemake workflow for Salmon quantification and FastQC quality controls

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

Code for basic MultiQC API service, providing run-time information about available updates.

Aggregate results from bioinformatics analyses across many samples into a single report.

CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲

Align reads over a reference genome, filter aligned-reads, and mark duplicates

Count your fastq-formatted rna-seq reads with Salmon