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microbiome-data

Here are 9 public repositories matching this topic...

waldronlab / curatedMetagenomicDataAnalyses

Analyses in R and Python Using curatedMetagenomicData

r bioconductor microbiome-analysis microbiome-data r01ca230551

Updated Nov 16, 2025
Python

liaoherui / GDmicro

GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.

deep-learning metagenomics gcn domain-adaptation microbiome-data human-gut

Updated Mar 22, 2024
Python

harini1111 / Microbiome-project

A microbiome knowledge graph was constructed using data from the Human Microbiome Project, IBD cohort. This project was done as a part of my dissertation for my MSc in Health Data Science with The University of Manchester. It was done as an internship with Zifo RnD Solutions, a leading Scientific Informatics Company.

python neo4j knowledge-graph graph-database microbiome neo4j-graph cypher-query-language microbiome-data

Updated Sep 14, 2022
Python

MarioPasc / Base-de-Datos-Microbiomas

Exploring different database implementations for clinical microbiome data

sql database mongodb xml microbiome-data

Updated Jun 8, 2024
Python

clemente-lab / mmeds-meta

A database for storing and analyzing omics data

python database microbiome sql-database microbiome-analysis microbiome-data

Updated Feb 9, 2026
Python

CultureBotAI / CommunityMech

Microbial Community Mechanisms Knowledge Base - LinkML-based modeling of microbial communities with evidence-based ecological interactions

microbial-communities microbiology microbiome microbiome-analysis microbial-ecology microbiome-data microbes microbial-interactions microbial-community-assembly microbial-community-dynamics

Updated Mar 11, 2026
Python

jtremblay / microbiomeutils

Python utility to generate distance matrices, perform PCoAs and generate taxonomic summaries using simple tab-separated feature tables.

microbiome microbiome-analysis microbiome-data

Updated May 17, 2022
Python

jtremblay / MicrobiomeML

Machine learning for microbiome data

machine-learning numpy microbiome-data

Updated Apr 13, 2023
Python

sacci / american-gut-to-csv

Convert the American Gut Microbiome Project phenotype .xml files into a single .csv file.

csv-converter xml-parsing phenotyping microbiome microbiome-analysis microbiome-data microbiome-datasets

Updated Nov 24, 2020
Python

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