This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
Gaussian mixture modelling - Unsupervised learning
Methylation Array Cross-Reactive Probes
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
Epicopy R package for CNV identification from methylation microarrays.
📦 Bioconductor data package associated with the methyvim R package
Detection of rare aberrantly methylated regions / epimutations in array and NGS data — an R/Bioc package
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