An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

KEGG Module Evaluation Tool

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Enzymatic Link Prediction

A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).

Chemical reaction balancing web service

CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)

Metabolic pathway inference using non-negative matrix factorization with community detection

Tool for the reconstruction of context-specific metabolic models based on omics data from several sources

a metabolic json parser and streamlit for BIGG database