Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction

Pathway Tools multiprocessing wrapper (for PathoLogic).

Metabolic pathway inference using multi-label classification with rich pathway features

A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).

Finding paths of interest in networks

A dockerfile for multiprocessing Pathway-Tools.

PAVER: Pathway Analysis Visualization with Embedding Representations

leADS: improved metabolic pathway inference based on active dataset subsampling

Singularity recipe for Pathway-Tools and mpwt.

CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)