Python library for hAndling metaData of METabolism.

A python library for metabolic networks sampling and analysis

Open source genome-scale metabolic models of human and model animals

TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.

COBRApy is a package for constraint-based modeling of metabolic networks.

SBML to RDF conversion

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

A Universal Modeling Language for Metabolic Flux Analysis

🗺️ A repository of CNApy projects

Pathway Tools multiprocessing wrapper (for PathoLogic).

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

debugging biological networks to reach coherence, completeness and consistency

Infer metabolic directions from moment differences of mass-weighted intensity distributions

A new computational pipeline that can be used to convert expression (RNA-seq) data into predicted flux potentials that indicate metabolic function

Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL

The code in this project serves to build a directed graph representing a metabolic network. It's main purpose is to write a graph file that can be visualized by the program Gephi.

Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002

Finding thermodynamic cycles in the metabolism

Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

Detection of deadends in metabolic networks