uwseds-group-OPMxplore created by GitHub Classroom

A statistical model to predict heterologous membrane protein expression in E. coli!

Map the depth on a PDB file

Dataset of the "Integrative Modeling of Membrane-associated Protein Assemblies" manuscript

The ProLint Webserver

A small Python package to set up electrostatic solvation free energy ("Born energy") calculations of an ion in a membrane protein and calculate the electrostatic free energy with APBS .

Membrane helix prediction with SVMs

Source code for building the EncoMPASS database

A Python package designed for analyzing the internal degrees of freedom within molecular structures, focusing particularly on membrane proteins. It conducts statistical analyses, providing deep insights into the dynamics and flexibility of molecular interactions. Ideal for finding the most flexible regions within a protein.

Membrane alpha helix packing and orientation predicrtor

Prolint2 is an optimized tool for analyzing and visualizing lipid-protein interactions from molecular dynamics trajectories.

A software for membrane analysis and subtraction in cryo-EM.

Documentation

A software for membrane analysis and subtraction in cryo-EM.

A gromacs tutorial for creating a gromos54A7 simulation system of a protein in a simple membrane

TooT-PLM-ionCT: A bioinformatics framework utilizing protein language models for accurate classification of ion channels and ion transporters from membrane proteins.

The Website of the Ramiréz Lab