Implementation of the FASTA algorithm from bioinformatics

Sequence alignment methods implementation

Extensions for the dtw package in R

Rapid and sensitive local alignment of genomic sequences employing motif anchors

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Needleman-Wunsch Algorithm for global alignment and local alignment

Algoritmos para el alineamiento de secuencias de ADN

Global and Local Sequence Alignment

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.

Local and Global Alignment API

A compilation of all the programs in my bioinformatics course

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.

My assignments from Munich

Rapid local alignment search by in silico PCR

Python implementation of Striped Smith-Waterman Algorithm

Fuzzy finder using Smith-Waterman algorithm

💻 Project for the course of Algorithms for Bioinformtics