Protein Prediction assignments from TUM

Notes

Exercise 0:

• Longest common subsequences
• Shortest common supersequences
• Levenshtein distance, similar motifs

Exercise 1:

• Codon distribution
• Expected amino acid distribution
• Open reading frames

Exercise 2:

• Protein Data Bank class, B-Factors

Exercise 3:

• Global alignment
• Local alignment

Exercise 4:

• Position-specific scoring matrix
• Multiple sequence alignment

Exercise 5:

• BLAST local alignment

Exercise 6:

• Numpy Perceptron

Exercise 7:

• AlphaFold (sources are lost)