Fuzzy finder using Smith-Waterman algorithm

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

A compilation of all the programs in my bioinformatics course

Rapid and sensitive local alignment of genomic sequences employing motif anchors

Extensions for the dtw package in R

Implementation of the FASTA algorithm from bioinformatics

Rapid local alignment search by in silico PCR

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Global and Local Sequence Alignment

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

Local and Global Alignment API

I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.

My assignments from Munich

💻 Project for the course of Algorithms for Bioinformtics

Sequence alignment methods implementation

Algoritmos para el alineamiento de secuencias de ADN

transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.

Needleman-Wunsch Algorithm for global alignment and local alignment