Same species annotation lift over pipeline.

A Nextflow workflow to generate lift over files for any pair of genomes

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

liftover for python, made fast with cython

A fast and efficient tool for converting chromatin interaction data between genome assemblies

An efficient genetic data imputation pipeline

Lifterover copy number segments in whole

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

Repository for miscellaneous bioinformatics scripts that may be useful to others.

a python pipeline to generate chain files between different genome assemblies for LiftOver.

Variant translation library for Clojure

A Go-written server for 23andMe-formatted raw data liftover

A crate for working with genomics chain files.

Go Language implementation of LiftOver

Lift same species genome co-ordinates from one assembly to another

Perform liftover on plink files

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

Scripts for making chain file for mm10 - ms10 liftover

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger