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1. nf-LO nf-LO Public

   A Nextflow workflow to generate lift over files for any pair of genomes

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2. hapbin hapbin Public

   Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

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3. CattleGraphGenomePaper CattleGraphGenomePaper Public

   Set of script for the paper on the cattle graph genome

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4. wBuffaloVsCow wBuffaloVsCow Public

   Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"

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5. nSPECTRa nSPECTRa Public

   Nextflow workflow to compute the mutation spectra

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6. CattleOManalyses CattleOManalyses Public

   Script and some results from the Optical mapping SV analyses

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