fast and lightweight counting of short k-mers
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Updated
Sep 30, 2022 - Python
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k-mer-counting
Here are 5 public repositories matching this topic...
A specialized datastructure for counting short DNA sequences for use in Bioinformatics.
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Updated
Oct 29, 2024 - Python
A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
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Sep 2, 2024 - Python
Python bioinformatics CLI for k-mer counts and de Bruijn graphs
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Oct 12, 2024 - Python
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
python
diversity
plotly
protein
dask
fastq
k-mer-counting
k-mer-frequency
divideandconquer
metagenomic-analysis
metatranscriptomic-analysis
kmer-frequency-count
nucleotides
diversity-estimation
database-independent-analysis
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Updated
Nov 30, 2022 - Python
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