A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.
bioinformatics pipeline genomics nextflow public-health irma variant-calling influenza illumina oxford-nanopore viral-genomics snpeff nf-core freyja rsv nextclade wastewater-surveillance wastewater-genomics respiratory-viruses iterative-assembly
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Updated
Jun 9, 2026 - Nextflow