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@UPHL-BioNGS

UPHL-BioNGS

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  1. Cecret Cecret Public

    Reference-based consensus creation

    Nextflow 50 27

  2. Grandeur Grandeur Public

    UPHL's Reference Free Pipeline

    Nextflow 25 7

  3. walkercreek walkercreek Public

    A nextflow pipeline for influenza genome analysis

    Nextflow 4 1

  4. Donut_Falls Donut_Falls Public

    Basic workflow for nanopore sequencing data

    Nextflow 14 7

Repositories

Showing 10 of 11 repositories
  • General_LW_scripts Public

    The scripts that UPHL uses to download things from basespace and run respective workflows

    UPHL-BioNGS/General_LW_scripts’s past year of commit activity
    Python 2 GPL-3.0 2 0 7 Updated Nov 13, 2024
  • Cecret Public

    Reference-based consensus creation

    UPHL-BioNGS/Cecret’s past year of commit activity
    Nextflow 50 MIT 27 4 1 Updated Nov 12, 2024
  • Donut_Falls Public

    Basic workflow for nanopore sequencing data

    UPHL-BioNGS/Donut_Falls’s past year of commit activity
    Nextflow 14 MIT 7 5 0 Updated Nov 7, 2024
  • Grandeur Public

    UPHL's Reference Free Pipeline

    UPHL-BioNGS/Grandeur’s past year of commit activity
    Nextflow 25 GPL-3.0 7 5 0 Updated Nov 7, 2024
  • Dockerfiles Public

    A collection of Dockerfiles for the images that we use

    UPHL-BioNGS/Dockerfiles’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Nov 4, 2024
  • mycosnp-nf Public Forked from CDCgov/mycosnp-nf

    CDCgov/mycosnp-nf

    UPHL-BioNGS/mycosnp-nf’s past year of commit activity
    Nextflow 0 Apache-2.0 33 0 0 Updated Sep 12, 2024
  • Wastewater-genomic-analysis Public
    UPHL-BioNGS/Wastewater-genomic-analysis’s past year of commit activity
    Python 1 0 1 0 Updated Aug 12, 2024
  • walkercreek Public

    A nextflow pipeline for influenza genome analysis

    UPHL-BioNGS/walkercreek’s past year of commit activity
    Nextflow 4 MIT 1 0 0 Updated Jun 20, 2024
  • ICA_Modified_Nextflow_Scripts Public

    To be able to run Nextflow scripts that are published on Github on ICA they must be modified because ICA does not have Nextflow do a gitpull and an ICA user cannot pass config or param files.

    UPHL-BioNGS/ICA_Modified_Nextflow_Scripts’s past year of commit activity
    Nextflow 2 GPL-3.0 0 0 0 Updated Sep 6, 2023
  • Nextstrain_Build Public

    A Nextflow Script that performs a Nextstrain 'Build' which creates a detailed phylogentic visualization that can be seen with the Nextstain Auspice tool.

    UPHL-BioNGS/Nextstrain_Build’s past year of commit activity
    Nextflow 0 MIT 0 2 0 Updated Aug 26, 2022
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