Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

Simulate patterns of DNA sharing between pedigree members

A prototype tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.

GWAS Pre-Processing Pipeline

Statistical inference of recent positive selection using IBD segments

Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).

a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.

efficient, accurate, and scalable IBD segment detection with unphased genotype data

A python package to facilitate identity-by-descent-based analysis

Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

A legacy version of the ibdsim2 app for simulating and visualising genetic sharing between pedigree members.

Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates

IBD-based pedigree generation software, built on top of and maximizing utility from the tools PRIMUS and ERSA

Exploratory analysis for donor-recipient whole genome sequences

Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"