Randomly subsample sequencing reads or alignments

Grep for FASTQ files

Command line utility for manipulating Illumina-generated FASTQ files.

FASTA and FASTQ parsing in Rust

quickly filter fastq files by matching sequences to a set of regex patterns

A quality control tool for FASTQ files written in rust

Remove human reads from a sequencing run

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

Extract subsets of ONT (Nanopore) reads based on time

A FASTA/FASTQ format parser library

mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

Simple demultiplexing of FASTQ, one oligo (barcode) at a time

🦀 Fqkit: A simple and cross-platform program for fastq file manipulation

Simple fastq read and base counter in Rust

a fastx parser for generating sequence length metrics

Ultrafast to get statistics from fasta and fastq files

a collection of CLI utilities for processing fasta/fastq (FASTX) files.

work with the time stamps of Oxford Nanopore (ONT) fastq files

A synthetic FASTQ record generator with pattern spiking