A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
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Aug 18, 2023 - Python
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epistasis
Here are 11 public repositories matching this topic...
A package for detecting epistasis by machine learning
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Jun 17, 2024 - Python
Code and simulations using interaction-LD score regression
gwas epistasis heritability gwas-tools gwas-summary-statistics ld-score-regression heritability-estimation
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Jul 2, 2024 - Python
A tool to predict missing data in sparsely sampled genotype-phenotype maps
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Aug 18, 2023 - Python
Learning the language of phylogeny with MSA Transformer
epistasis protein-evolution interpretable-machine-learning protein-language-model msa-transformer phylogenetic-reconstruction
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Feb 28, 2026 - Python
Inference of Epistatic Gene Networks
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Aug 25, 2014 - Python
PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.
encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects qtl-analysis genetic-inheritance
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Jan 3, 2025 - Python
A Python tool to calculate penetrance tables for high-order epistasis models
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Apr 19, 2022 - Python
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Sep 16, 2019 - Python
PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.
encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects qtl-analysis genetic-inheritance
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Jan 3, 2025 - Python
Complete reproduction of 'Generation-Updated Orthogonal Epistatic Kernels for Cross-Generation Genomic Prediction' - NOIA encoding, multi-kernel AI-REML, forward simulation, ablation study. 137 tests, 100% coverage.
python simulation reproducible-research breeding epistasis quantitative-genetics genomic-prediction noia reml gblup
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Apr 7, 2026 - Python
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