endocrinology

GlucoSym is an open-source simulator aimed to help in the testing and development of insulin delivery automation systems.

menstrualcycleR is a package for preparing longitudinal menstrual cycle data for nonlinear continuous data analysis. It implements Phase-Aligned Cycle Time Scaling (PACTS), the first hormonally-validated cycle standardization method.

BioMight - Human Biological Animation Engine

Calculator software helping to determine L-T4 and L-T3 substitution dosage according to the algorithms provided by the European Thyroid Association (ETA).

The source code for the cushing and acromegaly studies, currently ongoing

This repository documents a longitudinal 'n-of-1' case study where targeted holistic supplementation and photobiomodulation were used to manage a benign multinodular thyroid goiter, which resulted in improved sonographic features (favorable geometric and echogenic shift)

Analyses of saliva Alpha-Amylase and Cortisol in SAM study

Blood-work/lab levels tracking app that is both privacy oriented and visually appealing

This study explores morph-specific differences in gene expression and steroid hormone metabolism in ruff sandpipers (Calidris pugnax), focusing on the key enzyme HSD17B2.

A falsifiable framework for identifying reversible metabolic & endocrine drivers of first-episode psychosis — 14-day CGM + endocrine battery + a three-criterion causal valve in a prospective N=1,250 cohort, with pre-specified H1/H2 falsification gates. CC-BY-4.0.

AI web application to diagnose the malignancy of adrenocortical tumors based on LC-MS/MS

[R code] xgboost to classify female puberty status from the endocrine profile feature variable:

Xcode project for iPhone app Endo Tools - An app for physicians / endocrinologists to do complex medical calculations and decisions with few clicks

Second year endocrine coursepack flowcharts

Biomarker Assay Analysis: A Python-based study of hormonal regulation and enzymatic baseline consistency in a male cohort

A website for evidence based information on gender affirming hormone therapy

biology / medicine / health papers organized in markdown files

Streamlit app for HOMA-IR based insulin resistance assessment with OGTT+insulin profiles.

SPINA is software for determining constant structure-parameters of endocrine feedback control systems from hormone levels obtained in vivo. The first version of this cybernetic approach allows for evualuating the functional status of the thyroid gland, i.e. thyroid's secretory capacity (GT or SPINA-GT) and sum activity of peripheral deiodinases …

This repository contains the full R code used to reproduce the analyses presented in: