This repository includes scripts used in "Contribution of CRISPRable DNA on human complex traits"

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

This repository contains scripts for ChIPseq analysis with various BioConductor packages, for the paper "Chem-CRISPR/dCas9FCPF - a platform for chemically induced epigenome editing".

BWA-based alignment of CRISPR gRNA spacer sequences

an R package for repairing, comparing, and visualizing CRISPRs across environmental datasets

Annotate CRISPR and shRNA screening libraries

AlleleProfileR - gene editing bioinformatics analysis tool

Shiny interface for CRISPR gRNAs designed with the crisprVerse

Pre-trained models for the crisprScore package

R library for CRISPR analysis

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

Bowtie-based alignment of CRISPR gRNA spacer sequences

Base functions and classes for CRISPR gRNA design

Useful human and mouse data for the crisprVerse ecosystem

Visualization of CRISPR guide RNAs (gRNAs)

An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

Collection of R packages that work in harmony for CRISPR gRNA design

GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens