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snakemake-ms-proteomics
snakemake-ms-proteomics PublicPipeline for automatic processing and quality control of mass spectrometry data
Python 7
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snakemake-crispr-guides
snakemake-crispr-guides PublicA Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
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snakemake-ont-bacterial-variants
snakemake-ont-bacterial-variants PublicA Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
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nf-core-crispriscreen
nf-core-crispriscreen PublicProcess next generation sequencing data obtained from CRISPRi repression library screenings
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snakemake-bacterial-riboseq
snakemake-bacterial-riboseq PublicBacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
Python 5
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snakemake-ont-basecalling
snakemake-ont-basecalling PublicA Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
Python 4
Repositories
- snakemake-ont-basecalling Public
A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
MPUSP/snakemake-ont-basecalling’s past year of commit activity - snakemake-simple-mapping Public
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
MPUSP/snakemake-simple-mapping’s past year of commit activity - snakemake-workflow-template Public template Forked from snakemake-workflows/snakemake-workflow-template
A template for standard compliant snakemake-workflows
MPUSP/snakemake-workflow-template’s past year of commit activity - ignatov_et_al_2025 Public
R scripts and source data to reproduce the primary results presented in the manuscript: Ignatov et al. (2024).
MPUSP/ignatov_et_al_2025’s past year of commit activity - snakemake-bacterial-riboseq Public
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
MPUSP/snakemake-bacterial-riboseq’s past year of commit activity - snakemake-ms-proteomics Public
Pipeline for automatic processing and quality control of mass spectrometry data
MPUSP/snakemake-ms-proteomics’s past year of commit activity - snakemake-ont-bacterial-variants Public
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
MPUSP/snakemake-ont-bacterial-variants’s past year of commit activity - snakemake-crispr-guides Public
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
MPUSP/snakemake-crispr-guides’s past year of commit activity
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