BWA-based alignment of CRISPR gRNA spacer sequences

Base functions and classes for CRISPR gRNA design

Useful human and mouse data for the crisprVerse ecosystem

Collection of R packages that work in harmony for CRISPR gRNA design

This repository includes scripts used in "Contribution of CRISPRable DNA on human complex traits"

an R package for repairing, comparing, and visualizing CRISPRs across environmental datasets

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

Annotate CRISPR and shRNA screening libraries

Bowtie-based alignment of CRISPR gRNA spacer sequences

AlleleProfileR - gene editing bioinformatics analysis tool

This repository contains scripts for ChIPseq analysis with various BioConductor packages, for the paper "Chem-CRISPR/dCas9FCPF - a platform for chemically induced epigenome editing".

Shiny interface for CRISPR gRNAs designed with the crisprVerse

Pre-trained models for the crisprScore package

Visualization of CRISPR guide RNAs (gRNAs)

R library for CRISPR analysis

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens