bridge-recombinase

Here are 3 public repositories matching this topic...

ahmedanees-m / pen-stack

A verification and grounding layer for AI-driven genome writing. Foundation models and a grounded co-scientist agent propose edits; PEN-STACK checks each against validated tools, never a language model: where a write is safe and durable, which enzyme makes it, and where it goes off-target. Calibrated, provenance-tracked, pre-registered.

python machine-learning bioinformatics reproducible-research computational-biology open-science crispr artficial-intelligence genetic-engineering gene-therapy inverse-design genome-engineering agentic-ai safe-harbor genome-writing bridge-recombinase recombinase

Updated Aug 4, 2026
Python

ahmedanees-m / pen-compare

Star

Hierarchical certification framework (5-gate TrueWriterScore) for programmable genome editors, with sensitivity analysis, cross-pipeline triangulation, and a RAG Q&A layer over the PEN-STACK.

python machine-learning bioinformatics ruff genome-editing genetic-engineering pre-registration streamlit is110 rag-llm agentic-ai pen-stack bridge-recombinase certification-framework true-writer pen-compare molecular-pen writer-not-scissors bridge-rna

Updated Jul 16, 2026
Python

ahmedanees-m / pen-assemble

Star

Automated design and scoring engine for IS110-family bridge recombinase variants, nominating 1,029 candidates via an 8-axis PenScore over pre-registered predictions.

python bioinformatics synthetic-biology computational-biology protein-design genome-editing genetic-engineering gene-therapy pen-stack proteinmpnn genome-atlas bridge-recombinase is110-family penscore deimmunization mech-class

Updated Jul 17, 2026
HTML

Improve this page

Add a description, image, and links to the bridge-recombinase topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the bridge-recombinase topic, visit your repo's landing page and select "manage topics."

Learn more