Python wraper for MetaMap
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Jul 22, 2020 - Python
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biomedical-informatics
Here are 59 public repositories matching this topic...
An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…
python neo4j rdf semantic-web ontology biomedical-informatics interoperability knowledge-graph graph-database umls py2neo neosemantics biomedical-ontologies medical-terminology
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Mar 20, 2024 - Python
Few- and Zero-shot Multi-Label Learning for Structured Label Spaces
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May 4, 2020 - Python
A Scalable Deep Learning Framework for Wave-Based Inverse Problems
deep-learning inversion regression biomedical-informatics hpc-clusters wave-propagation geophysical-inversions seismic-inversion elastography material-characterization structural-health-monitoring nondestructive-evaluation
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Jun 18, 2026 - Python
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
natural-language-processing text-mining data-mining bioinformatics rna-seq biology biomedical-informatics annotation-processor ontologies entity-matching
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Aug 13, 2026 - Python
Computational Analysis of Novel Drug Opportunities
python machine-learning bioinformatics shotgun biomedical-informatics drug-discovery drug-repurposing docking drug-design multitarget
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Jul 23, 2026 - Python
Package for biomedical data model and metadata ingress management
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Apr 4, 2026 - Python
Few- and Zero-shot Multi-Label Learning for Structured Label Spaces
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Aug 27, 2018 - Python
MD-ViSCo: A Unified Model for Multi-Directional Vital Sign Waveform Conversion. IEEE JBHI 2026.
deep-learning time-series waveform pytorch biomedical-informatics ecg transformer unet abp vital-signs ppg blood-pressure biomedical-signal-processing
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Apr 17, 2026 - Python
Generated knowledge graph of biomedical LLM agent systems
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Jul 23, 2026 - Python
A text summarization framework to identify major opinions from healthcare text
text-mining text-classification biomedical-informatics nlp-machine-learning health-informatics biomedical-data-science
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Mar 26, 2021 - Python
AI-powered system for mapping clinical text to Human Phenotype Ontology (HPO) terms using Retrieval-Augmented Generation (RAG). Features Python CLI/library, FastAPI backend, and Vue.js frontend for interactive phenotype extraction from medical texts.
python machine-learning text-mining vuejs biomedical-informatics artificial-intelligence healthcare semantic-search hpo rag fastapi clinical-text phenotype-ontology medical-nlp retrieval-augmented-generation
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Aug 24, 2026 - Python
An advanced multi-agent system for clinical decision support, enabling deep phenotypic prediction by integrating hierarchical multi-modal deviation maps and non-tabular electronic health records.
biomedical-informatics clinical-decision-support multimodal-learning multi-agent-system explainable-ai clinical-phenotyping medical-ai healthcare-ai neuropsychiatry retrieval-augmented-generation llm-agents neuroscience-ai agent-orchestration
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Mar 23, 2026 - Python
Services and guidelines for normalizing disease terms
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Aug 10, 2026 - Python
Comprehensive bioinformatics platform for precision medicine. Explore drug-gene interactions, pharmacokinetics, clinical trials, and drug repurposing. 20+ research modules. Free & open-source (MIT).
python bioinformatics gwas genomics cheminformatics pharmacology biomedical-informatics open-science drug-discovery research-tool drugs interaction copilot pharmacokinetics biomedical clinical-research biomedical-engineering bioinformatics-tool polypharmacy drug-interactions
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Mar 24, 2026 - Python
Residue-level Context Learning for Interacting Proteins
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Jul 17, 2026 - Python
NTxPred2: An improved method for predicting neurotoxicity of peptides and proteins
bioinformatics biomedical-informatics artificial-intelligence risk-assessment large-language-models protein-therapeutics
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May 8, 2026 - Python
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Jun 15, 2023 - Python
A Python Library for Calculating Seizure Quality Indices in Electroconvulsive Therapy
bioinformatics neuroscience biomedical-informatics eeg medical eeg-signals ect depression electroencephalography psychtoolbox biosignals medical-physics eeg-analysis biomedical-data-science psychiatry eeg-signals-processing medecine biosignal brainstimulation
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May 24, 2026 - Python
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