🍀 bioseq - a Python package to handle biological sequences and perform common Bioinformatics operations.

An object-oriented Python library for simulating biological sequences

🧬 M:CC 2021/2022 - 1ˢᵗ year/ 2ⁿᵈ semester

Discriminative modeling to support cis-regulation of DNA methylation

Algorithms for Bionformatics - Python Module to handle biological sequences and run common algorithms and techniques

Retrieve and efficiently index entire biological sequence databases

Histone Modification Interpreter

C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College

A native Windows application that allows for the conversion of DNA to RNA and its respective proteins. Despite being created on and for Windows, the application has been styled after the GUI found on MacOS. The executable is now downloadable. The current release is v1.0.0.

SEEPS: Sequence Evolution and Epidemiological Process Simulator

Combinatorial algorithms in bioinformatics - Searching motifs in biological sequences

Neural seq2seq model + attention with applications for biological sequences in mind

Program to store and display biological sequence according to user's choice of file format

Unix-style text manipulation tools for biological sequence data.

FgClust

Developed a Parser software to meticulously extract vital information such as GO, KEGG, and DOI numbers from each protein sequence within UniProt files. The software boasts adaptability for both command-line and GUI use.

An encoder for biological sequences using Copy Models and Finite-context models

Makefile (of all things) to space-efficiently mirror selected NCBI resources