Demonstration of the UPGMA hierarchal clustering algorithm in Pandas, Seaborn, and Scipy
Phylogenetic tree manipulating with Python
Phylogenetic Insights from Turtles, Lizards, Crocodiles and Birds Sequences. Jupyter Notebook with tree construction
🍀 bioseq - a Python package to handle biological sequences and perform common Bioinformatics operations.
UPGMA Algorithm in C++
Repository for Computational Biology course at ETH Zürich
C++ tool for constructing phylogenetic trees from DNA sequences using NJ, UPGMA, Fitch-Margoliash and Minimum Evolution algorithms
Project for the master course: Introduction to bioinformatics
UPGMA clustering of constructing phylogenetic relationships implemented from scratch
A complete SSR population genetics toolkit for any species. Includes data cleaning, UPGMA clustering, PCoA, STRUCTURE formatting, STRUCTURE barplot visualization, and supporting scripts for reproducible microsatellite population analyses.
This is an App that allows You to perform some task on the Bioinformatics field.
From-scratch molecular-phylogenetics algorithms in R — pairwise alignment, TN93 evolution simulation, UPGMA, Felsenstein likelihood, and independent contrasts, each with passing RUnit tests.
[Python] Construction of SARS-CoV-2 Phylogenetic Tree.
A Python toolkit for simulating sequence evolution and exploring molecular clock algorithms
A simple PHP library to build phylogenic trees from distance matrix
An end-to-end scRNA-seq analysis pipeline processing raw PBMC data through QC, dimensionality reduction, and clustering, deployed as an interactive, production-ready R Shiny dashboard.
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