🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
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Dec 9, 2025 - Python
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ancientdna
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A Snakemake-based pipeline for processing and quality-controlling ancient DNA data, including contamination assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
bioinformatics snakemake pipeline genomics genome bioinformatics-pipeline multiqc fasta bam fastq adna dna-sequencing genome-mapping ancientdna ancient-dna short-reads raw-reads ancient-dna-analysis short-read-mapping
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Jul 17, 2026 - Python
An automated snakemake pipeline designed to benchmark the classification performance and accuracy of previously published aDNA genetic kinship estimation methods.
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Mar 17, 2026 - Python
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