A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Nextflow pipeline for BlobToolKit for Sanger ToL production suite

MIST: a metagenomic intra-species typing tool.

🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets

Maintained elsewhere. See README.

A python implementation of the decontam R package for ASV filtering.

An open-source R package containing decontamination pipelines for low-biomass microbiome data