Tools for dealing with neuroimaging data in the BIDS structure

PNH segmentation pipelines based on nipype

A Matlab-based software package for preprocessing the resting-state fMRI data

afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.

Prisma preprocessing (AFNI)

Wrapper Functions for 'AFNI' software in R

Convenience functions for the LNCD. Includes db query, data processing, modeling, and visualizing

Scripts to process preclinical obsessive compulsive disorder data

Preprocessing fMRI scans, localizing the brain area that processes faces.

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.

Neuroscience Lab Assignments related to various aspects of neuroscience research, including visual search tasks with Psychtoolbox, regression and ANOVA analysis, EEG preprocessing with EEGLab, and fMRI analysis with AFNI.

BrainLife.io Regional Homogeneity app

Various scripts (Bash, Matlab, Python) for processing ASL MRI data using AFNI, SPM, and FSL.

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Docker image that provides a Ubuntu 16.04 (Xenial) with all CMP pre-requisite software installed

runs AFNI's 3dQwarp function over a NIfTI file

batch scripts to install afni, tailored to the process for installing in ubuntu on windows subsystem for linux.

Pipeline to analyze fMRI data with AFNI