pass rng from cellflow.predict #245
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
selmanozleyen
added a commit
that referenced
this pull request
Jun 13, 2025
commit 56888eb Merge: d169628 9068a93 Author: Selman Özleyen <32667648+selmanozleyen@users.noreply.github.com> Date: Fri Jun 13 12:03:07 2025 +0200 Merge pull request #235 from theislab/feature/predict_batch Feature and Speedup: `predict_batch` commit d169628 Merge: f6cdf17 801adf0 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri Jun 13 11:28:18 2025 +0200 Merge pull request #239 from theislab/feature/ooc-dataloading Feature: Out of Core Dataloading Option commit 801adf0 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 15:31:53 2025 +0200 add return types commit 6d44054 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:56:48 2025 +0200 update error message commit 3bda128 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:56:20 2025 +0200 document better commit de3b6ee Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Jun 12 11:51:03 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 8f18574 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:50:55 2025 +0200 remove unused fixture commit 8e808a9 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Jun 12 11:17:33 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 67e64e1 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:17:22 2025 +0200 add tests commit ab95081 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 12:08:48 2025 +0200 throw error when there isn't any valid indices commit 9068a93 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Jun 12 09:38:43 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit d65151a Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 11:38:34 2025 +0200 When using PredictionSampler we can't use batched mode commit bb941ea Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 11:33:45 2025 +0200 clarify documentation that this requires same number of cells commit 7461dc3 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sun Jun 1 16:07:15 2025 +0200 Fix type error commit 04566e7 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Tue May 27 17:11:02 2025 +0200 Replace tree map commit 4a9bbcd Merge: 855c5d9 f6cdf17 Author: LeonStadelmann <169152764+LeonStadelmann@users.noreply.github.com> Date: Tue May 27 16:58:19 2025 +0200 Merge branch 'main' into feature/predict_batch commit f6cdf17 Merge: b4b7c96 70766f5 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 27 09:10:57 2025 +0200 Merge pull request #246 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate commit b4b7c96 Merge: 7a69c5d b67804f Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 27 09:10:36 2025 +0200 Merge pull request #245 from theislab/feature/stochastic_to_cellflow_class pass rng from cellflow.predict commit 70766f5 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon May 26 18:56:02 2025 +0000 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/biomejs/pre-commit: v2.0.0-beta.4 → v2.0.0-beta.5](biomejs/pre-commit@v2.0.0-beta.4...v2.0.0-beta.5) - [github.com/tox-dev/pyproject-fmt: v2.5.1 → v2.6.0](tox-dev/pyproject-fmt@v2.5.1...v2.6.0) - [github.com/astral-sh/ruff-pre-commit: v0.11.10 → v0.11.11](astral-sh/ruff-pre-commit@v0.11.10...v0.11.11) commit b67804f Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Mon May 26 11:03:13 2025 +0200 fix callback/ commit b9bc6c2 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Mon May 26 09:04:25 2025 +0200 pass rng from cellflow.predict commit 7a69c5d Merge: ce064e3 50a3cc8 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:17:03 2025 +0200 Merge pull request #238 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate commit ce064e3 Merge: 6cb5540 b6c0bdb Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:14:53 2025 +0200 Merge pull request #215 from theislab/add/solver_callback Add solver to callback call commit 6cb5540 Merge: 0dbf90f 83db489 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:05:14 2025 +0200 Merge pull request #233 from theislab/tutorial/combosciplex add combosciplex commit 0dbf90f Merge: d8ae659 69327d9 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:04:55 2025 +0200 Merge pull request #244 from theislab/tests/find_failing2 deprecation python 3.10 commit 69327d9 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 15:42:55 2025 +0200 enable all tests commit 83db489 Merge: 63c4966 d8ae659 Author: Dominik Klein <domin.klein@gmail.com> Date: Fri May 23 15:29:53 2025 +0200 Merge branch 'main' into tutorial/combosciplex commit 63c4966 Author: Dominik Klein <domin.klein@gmail.com> Date: Fri May 23 15:22:53 2025 +0200 add combosciplex commit 855c5d9 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Fri May 23 14:59:56 2025 +0200 revert duplicate removal commit 235bc0e Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Fri May 23 14:03:43 2025 +0200 emove duplicate commit 24ade1e Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Fri May 23 14:01:31 2025 +0200 Add testing for genot predict commit 340b696 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 12:23:15 2025 +0200 only enable test_cellflow_with_validation commit 9dfcd18 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 11:50:27 2025 +0200 skip some tests again commit f481dac Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:38:10 2025 +0200 enable more tests again commit 6bb6550 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:27:57 2025 +0200 deprecate 3.10 commit 8e8d2ad Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:26:24 2025 +0200 deprecate 3.10 commit 11d2f55 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:24:35 2025 +0200 deprecate 3.10 commit 459f435 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:22:14 2025 +0200 enable some more tests commit 0b56b4c Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:05:24 2025 +0200 skip more tests commit 2e7aac9 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 09:48:30 2025 +0200 skip more tests commit d8ae659 Merge: 70eec9a f3c840c Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 16:27:36 2025 +0200 Merge pull request #241 from theislab/fix/tokenattention fix TokenAttention commit 0da9154 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 16:25:26 2025 +0200 skip more tests commit 7de55b3 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 15:06:36 2025 +0200 skip more tests commit 6e266a2 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu May 22 11:17:07 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 7840c80 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 13:16:42 2025 +0200 skip gene emb tests commit f3c840c Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 08:41:30 2025 +0200 update scvi dependency commit fd76f07 Author: selmanozleyen <syozleyen@gmail.com> Date: Wed May 21 13:15:15 2025 +0200 add genot commit e97edd2 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Wed May 21 12:41:07 2025 +0200 Handle empty input commit 454734e Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 19:31:39 2025 +0200 revert previous precommit changes commit 0884a8b Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 17:17:10 2025 +0200 fix tests commit 186bcaa Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 15:35:46 2025 +0200 fix tests commit c5c0494 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 15:30:09 2025 +0200 fix TokenAttention commit 1e585cd Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue May 20 10:46:42 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 5dc4a54 Author: selmanozleyen <syozleyen@gmail.com> Date: Tue May 20 12:45:24 2025 +0200 support both dataloaders commit dd098fa Author: selmanozleyen <syozleyen@gmail.com> Date: Tue May 20 11:21:35 2025 +0200 init commit 50a3cc8 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon May 19 18:57:43 2025 +0000 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/biomejs/pre-commit: v2.0.0-beta.3 → v2.0.0-beta.4](biomejs/pre-commit@v2.0.0-beta.3...v2.0.0-beta.4) - [github.com/astral-sh/ruff-pre-commit: v0.11.9 → v0.11.10](astral-sh/ruff-pre-commit@v0.11.9...v0.11.10) commit 2ccb43d Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sun May 18 12:33:32 2025 +0200 Add batched predict test commit 10edee2 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sat May 17 20:11:45 2025 +0200 Adjust docs commit b6c0bdb Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sat May 17 17:42:27 2025 +0200 fix docs commit 021aff0 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu May 15 12:42:30 2025 +0200 update implementation so that two functions predict and predict batch are unified commit 6bdbf5c Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue May 13 16:24:30 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit db6dc69 Author: selman.ozleyen <syozleyen@gmail.com> Date: Tue May 13 18:20:22 2025 +0200 needs testing commit a3c43d3 Author: selman.ozleyen <syozleyen@gmail.com> Date: Tue May 13 18:00:26 2025 +0200 condition keys left to add commit 03dfb2b Author: selman.ozleyen <syozleyen@gmail.com> Date: Tue May 13 17:50:41 2025 +0200 init commit f1e8704 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon May 12 11:24:11 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit facf52d Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Mon May 12 13:23:52 2025 +0200 Added source data parameter + stochastic test commit 04a1d2c Author: Dominik Klein <domin.klein@gmail.com> Date: Fri May 9 13:35:02 2025 +0200 add combosciplex commit 54e2386 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu May 1 16:16:21 2025 +0200 Rename flow commit ac8d073 Merge: 5327a05 4970ad4 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu May 1 16:14:11 2025 +0200 Merge branch 'main' into add/solver_callback commit 5327a05 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu May 1 12:37:09 2025 +0200 Added test for custom callbacks commit e650031 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu Apr 24 18:09:57 2025 +0200 Add typing and solver for on_train_end commit 5e18f6e Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Mon Apr 21 16:57:33 2025 +0200 Add solver to callback call
selmanozleyen
added a commit
that referenced
this pull request
Jun 13, 2025
add tests [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci resolve comments Squashed commit of the following: commit 56888eb Merge: d169628 9068a93 Author: Selman Özleyen <32667648+selmanozleyen@users.noreply.github.com> Date: Fri Jun 13 12:03:07 2025 +0200 Merge pull request #235 from theislab/feature/predict_batch Feature and Speedup: `predict_batch` commit d169628 Merge: f6cdf17 801adf0 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri Jun 13 11:28:18 2025 +0200 Merge pull request #239 from theislab/feature/ooc-dataloading Feature: Out of Core Dataloading Option commit 801adf0 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 15:31:53 2025 +0200 add return types commit 6d44054 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:56:48 2025 +0200 update error message commit 3bda128 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:56:20 2025 +0200 document better commit de3b6ee Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Jun 12 11:51:03 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 8f18574 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:50:55 2025 +0200 remove unused fixture commit 8e808a9 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Jun 12 11:17:33 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 67e64e1 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 13:17:22 2025 +0200 add tests commit ab95081 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 12:08:48 2025 +0200 throw error when there isn't any valid indices commit 9068a93 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Jun 12 09:38:43 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit d65151a Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 11:38:34 2025 +0200 When using PredictionSampler we can't use batched mode commit bb941ea Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu Jun 12 11:33:45 2025 +0200 clarify documentation that this requires same number of cells commit 7461dc3 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sun Jun 1 16:07:15 2025 +0200 Fix type error commit 04566e7 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Tue May 27 17:11:02 2025 +0200 Replace tree map commit 4a9bbcd Merge: 855c5d9 f6cdf17 Author: LeonStadelmann <169152764+LeonStadelmann@users.noreply.github.com> Date: Tue May 27 16:58:19 2025 +0200 Merge branch 'main' into feature/predict_batch commit f6cdf17 Merge: b4b7c96 70766f5 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 27 09:10:57 2025 +0200 Merge pull request #246 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate commit b4b7c96 Merge: 7a69c5d b67804f Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 27 09:10:36 2025 +0200 Merge pull request #245 from theislab/feature/stochastic_to_cellflow_class pass rng from cellflow.predict commit 70766f5 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon May 26 18:56:02 2025 +0000 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/biomejs/pre-commit: v2.0.0-beta.4 → v2.0.0-beta.5](biomejs/pre-commit@v2.0.0-beta.4...v2.0.0-beta.5) - [github.com/tox-dev/pyproject-fmt: v2.5.1 → v2.6.0](tox-dev/pyproject-fmt@v2.5.1...v2.6.0) - [github.com/astral-sh/ruff-pre-commit: v0.11.10 → v0.11.11](astral-sh/ruff-pre-commit@v0.11.10...v0.11.11) commit b67804f Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Mon May 26 11:03:13 2025 +0200 fix callback/ commit b9bc6c2 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Mon May 26 09:04:25 2025 +0200 pass rng from cellflow.predict commit 7a69c5d Merge: ce064e3 50a3cc8 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:17:03 2025 +0200 Merge pull request #238 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate commit ce064e3 Merge: 6cb5540 b6c0bdb Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:14:53 2025 +0200 Merge pull request #215 from theislab/add/solver_callback Add solver to callback call commit 6cb5540 Merge: 0dbf90f 83db489 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:05:14 2025 +0200 Merge pull request #233 from theislab/tutorial/combosciplex add combosciplex commit 0dbf90f Merge: d8ae659 69327d9 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 17:04:55 2025 +0200 Merge pull request #244 from theislab/tests/find_failing2 deprecation python 3.10 commit 69327d9 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 15:42:55 2025 +0200 enable all tests commit 83db489 Merge: 63c4966 d8ae659 Author: Dominik Klein <domin.klein@gmail.com> Date: Fri May 23 15:29:53 2025 +0200 Merge branch 'main' into tutorial/combosciplex commit 63c4966 Author: Dominik Klein <domin.klein@gmail.com> Date: Fri May 23 15:22:53 2025 +0200 add combosciplex commit 855c5d9 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Fri May 23 14:59:56 2025 +0200 revert duplicate removal commit 235bc0e Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Fri May 23 14:03:43 2025 +0200 emove duplicate commit 24ade1e Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Fri May 23 14:01:31 2025 +0200 Add testing for genot predict commit 340b696 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 12:23:15 2025 +0200 only enable test_cellflow_with_validation commit 9dfcd18 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 11:50:27 2025 +0200 skip some tests again commit f481dac Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:38:10 2025 +0200 enable more tests again commit 6bb6550 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:27:57 2025 +0200 deprecate 3.10 commit 8e8d2ad Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:26:24 2025 +0200 deprecate 3.10 commit 11d2f55 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:24:35 2025 +0200 deprecate 3.10 commit 459f435 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:22:14 2025 +0200 enable some more tests commit 0b56b4c Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 10:05:24 2025 +0200 skip more tests commit 2e7aac9 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Fri May 23 09:48:30 2025 +0200 skip more tests commit d8ae659 Merge: 70eec9a f3c840c Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 16:27:36 2025 +0200 Merge pull request #241 from theislab/fix/tokenattention fix TokenAttention commit 0da9154 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 16:25:26 2025 +0200 skip more tests commit 7de55b3 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 15:06:36 2025 +0200 skip more tests commit 6e266a2 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu May 22 11:17:07 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 7840c80 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 13:16:42 2025 +0200 skip gene emb tests commit f3c840c Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Thu May 22 08:41:30 2025 +0200 update scvi dependency commit fd76f07 Author: selmanozleyen <syozleyen@gmail.com> Date: Wed May 21 13:15:15 2025 +0200 add genot commit e97edd2 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Wed May 21 12:41:07 2025 +0200 Handle empty input commit 454734e Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 19:31:39 2025 +0200 revert previous precommit changes commit 0884a8b Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 17:17:10 2025 +0200 fix tests commit 186bcaa Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 15:35:46 2025 +0200 fix tests commit c5c0494 Author: Dominik Klein <dominik.klein@helmholtz-munich.de> Date: Tue May 20 15:30:09 2025 +0200 fix TokenAttention commit 1e585cd Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue May 20 10:46:42 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 5dc4a54 Author: selmanozleyen <syozleyen@gmail.com> Date: Tue May 20 12:45:24 2025 +0200 support both dataloaders commit dd098fa Author: selmanozleyen <syozleyen@gmail.com> Date: Tue May 20 11:21:35 2025 +0200 init commit 50a3cc8 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon May 19 18:57:43 2025 +0000 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/biomejs/pre-commit: v2.0.0-beta.3 → v2.0.0-beta.4](biomejs/pre-commit@v2.0.0-beta.3...v2.0.0-beta.4) - [github.com/astral-sh/ruff-pre-commit: v0.11.9 → v0.11.10](astral-sh/ruff-pre-commit@v0.11.9...v0.11.10) commit 2ccb43d Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sun May 18 12:33:32 2025 +0200 Add batched predict test commit 10edee2 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sat May 17 20:11:45 2025 +0200 Adjust docs commit b6c0bdb Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Sat May 17 17:42:27 2025 +0200 fix docs commit 021aff0 Author: selman.ozleyen <syozleyen@gmail.com> Date: Thu May 15 12:42:30 2025 +0200 update implementation so that two functions predict and predict batch are unified commit 6bdbf5c Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue May 13 16:24:30 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit db6dc69 Author: selman.ozleyen <syozleyen@gmail.com> Date: Tue May 13 18:20:22 2025 +0200 needs testing commit a3c43d3 Author: selman.ozleyen <syozleyen@gmail.com> Date: Tue May 13 18:00:26 2025 +0200 condition keys left to add commit 03dfb2b Author: selman.ozleyen <syozleyen@gmail.com> Date: Tue May 13 17:50:41 2025 +0200 init commit f1e8704 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon May 12 11:24:11 2025 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit facf52d Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Mon May 12 13:23:52 2025 +0200 Added source data parameter + stochastic test commit 04a1d2c Author: Dominik Klein <domin.klein@gmail.com> Date: Fri May 9 13:35:02 2025 +0200 add combosciplex commit 54e2386 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu May 1 16:16:21 2025 +0200 Rename flow commit ac8d073 Merge: 5327a05 4970ad4 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu May 1 16:14:11 2025 +0200 Merge branch 'main' into add/solver_callback commit 5327a05 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu May 1 12:37:09 2025 +0200 Added test for custom callbacks commit e650031 Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Thu Apr 24 18:09:57 2025 +0200 Add typing and solver for on_train_end commit 5e18f6e Author: LeonStadelmann <leonstadlmnn@gmail.com> Date: Mon Apr 21 16:57:33 2025 +0200 Add solver to callback call Revert "resolve comments" This reverts commit 1429cab. Revert "Revert "resolve comments"" This reverts commit 6f0d747. Revert "Squashed commit of the following:" This reverts commit d850771.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.