Open
Description
Bug description
I use my own labeled dataset and I want to train SLEAP with multi-animal bottom pipeline. I go through the GUI to train.
Expected behaviour
Training works.
Actual behaviour
I have an error at the very beginning of the training
[...]
INFO:sleap.nn.training:Created run path: /Users/dcclab/Documents/vpineaunoel/GitHub/AutomaticBehaviourAnalysis/mice_vivarium_sleap/models/20241104-MultianimalBottomUp241104_110233.multi_instance.n=1540
INFO:sleap.nn.training:Setting up visualization...
python(36403,0x7ff855b867c0) malloc: *** error for object 0x600005d481a4: pointer being freed was not allocated
python(36403,0x7ff855b867c0) malloc: *** set a breakpoint in malloc_error_break to debug
Run Path: /Users/dcclab/Documents/vpineaunoel/GitHub/AutomaticBehaviourAnalysis/mice_vivarium_sleap/models/20241104-MultianimalBottomUp241104_110233.multi_instance.n=1540
I thought it was a problem with the memory so I changed the maximal number of threads to 16 before launching the SLEAP GUI with export OMP_NUM_THREADS=16 but I still have the error.
Your personal set up
- OS: MacOS Pro 2019
- Processor : 3.2 GHz 16-Core Intel Xeon W
- Memory : 768 GB 2933 MHz DDR4
- GPU : AMD Radeon Pro Vega II, 32 GB of VRAM
- Version(s): SLEAP 1.3.3, python 3.9.15, tensorflow 2.12.0 (I actually installed tensorflow-metal to use my GPU), numpy 1.23.00 (I changed that to make all dependencies work)
- SLEAP installation method (listed here):
- Conda from package (with mamba because I am on MacOS)
- Conda from source
- pip package
- Apple Silicon Macs
Environment packages
mamba list :
# packages in environment at /Users/dcclab/miniforge3/envs/sleap:
#
# Name Version Build Channel
abseil-cpp 20211102.0 hddbf539_3 conda-forge
absl-py 2.1.0 pyhd8ed1ab_0 conda-forge
aiohappyeyeballs 2.4.3 pyhd8ed1ab_0 conda-forge
aiohttp 3.10.10 py39h33701b3_0 conda-forge
aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge
aom 3.5.0 hf0c8a7f_0 conda-forge
astunparse 1.6.3 pyhd8ed1ab_2 conda-forge
async-timeout 4.0.3 pyhd8ed1ab_0 conda-forge
attrs 23.1.0 pypi_0 pypi
blinker 1.8.2 pyhd8ed1ab_0 conda-forge
blosc 1.21.5 heccf04b_0 conda-forge
brotli 1.0.9 hb7f2c08_9 conda-forge
brotli-bin 1.0.9 hb7f2c08_9 conda-forge
brotli-python 1.0.9 py39h7a8716b_9 conda-forge
brunsli 0.1 h046ec9c_0 conda-forge
bzip2 1.0.8 hfdf4475_7 conda-forge
c-ares 1.34.2 h32b1619_0 conda-forge
c-blosc2 2.12.0 h0ae8482_0 conda-forge
ca-certificates 2024.8.30 h8857fd0_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 5.5.0 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 h904041c_1014 conda-forge
cattrs 1.1.1 pyhd8ed1ab_0 conda-forge
certifi 2024.8.30 pyhd8ed1ab_0 conda-forge
cffi 1.17.1 py39h8ddeee6_0 conda-forge
cfitsio 4.2.0 hd56cc12_0 conda-forge
charls 2.3.4 he49afe7_0 conda-forge
charset-normalizer 3.4.0 pyhd8ed1ab_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
contourpy 1.2.1 py39h0ca7971_0 conda-forge
cryptography 39.0.0 py39h7eb6a14_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dav1d 1.2.1 h0dc2134_0 conda-forge
efficientnet 1.0.0 pypi_0 pypi
expat 2.6.3 hac325c4_0 conda-forge
ffmpeg 4.4.2 gpl_h8b4fe81_112 conda-forge
flatbuffers 24.3.25 pypi_0 pypi
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.14.2 h5bb23bf_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.54.1 py39h20cc651_1 conda-forge
freetype 2.12.1 h60636b9_2 conda-forge
frozenlist 1.5.0 py39h296a897_0 conda-forge
gast 0.4.0 pyh9f0ad1d_0 conda-forge
geos 3.13.0 hac325c4_0 conda-forge
gettext 0.22.5 hdfe23c8_3 conda-forge
gettext-tools 0.22.5 hdfe23c8_3 conda-forge
giflib 5.2.2 h10d778d_0 conda-forge
glib 2.80.2 h0f68cf7_0 conda-forge
glib-tools 2.80.2 hc27840c_0 conda-forge
gmp 6.3.0 hf036a51_2 conda-forge
gnutls 3.7.9 h1951705_0 conda-forge
google-auth 2.35.0 pyhff2d567_0 conda-forge
google-auth-oauthlib 1.0.0 pypi_0 pypi
google-pasta 0.2.0 pyhd8ed1ab_1 conda-forge
graphite2 1.3.13 h73e2aa4_1003 conda-forge
grpc-cpp 1.46.4 hea9d06c_3 conda-forge
grpcio 1.67.1 pypi_0 pypi
gst-plugins-base 1.22.9 h3fb38fc_1 conda-forge
gstreamer 1.22.9 hf63bbb8_1 conda-forge
h2 4.1.0 pyhd8ed1ab_0 conda-forge
h5py 3.8.0 nompi_py39h7d40783_100 conda-forge
harfbuzz 5.3.0 h08f8713_0 conda-forge
hdf5 1.12.2 nompi_h70e9adf_101 conda-forge
hpack 4.0.0 pyh9f0ad1d_0 conda-forge
hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge
icu 70.1 h96cf925_0 conda-forge
idna 3.10 pyhd8ed1ab_0 conda-forge
image-classifiers 1.0.0 pypi_0 pypi
imagecodecs 2022.9.26 py39h8036967_4 conda-forge
imageio 2.36.0 pyh12aca89_1 conda-forge
imgaug 0.4.0 pyhd8ed1ab_1 conda-forge
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 8.5.0 pyha770c72_0 conda-forge
importlib-resources 6.4.5 pyhd8ed1ab_0 conda-forge
importlib_resources 6.4.5 pyhd8ed1ab_0 conda-forge
jasper 2.0.33 h7c6fec8_1 conda-forge
jax 0.4.30 pypi_0 pypi
jaxlib 0.4.30 pypi_0 pypi
joblib 1.4.2 pyhd8ed1ab_0 conda-forge
jpeg 9e hb7f2c08_3 conda-forge
jsmin 3.0.1 pyhd8ed1ab_0 conda-forge
jsonpickle 1.2 py_0 conda-forge
jsonschema 4.19.0 pypi_0 pypi
jsonschema-specifications 2023.7.1 pypi_0 pypi
jxrlib 1.1 h10d778d_3 conda-forge
keras 2.12.0 pypi_0 pypi
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pyhd8ed1ab_0 conda-forge
kiwisolver 1.4.7 py39h0d8d0ca_0 conda-forge
krb5 1.20.1 h0165f36_0 conda-forge
lame 3.100 hb7f2c08_1003 conda-forge
lazy-loader 0.4 pyhd8ed1ab_1 conda-forge
lazy_loader 0.4 pyhd8ed1ab_1 conda-forge
lcms2 2.14 h90f4b2a_0 conda-forge
lerc 4.0.0 hb486fe8_0 conda-forge
libabseil 20211102.0 cxx17_h844d122_3 conda-forge
libaec 1.1.3 h73e2aa4_0 conda-forge
libasprintf 0.22.5 hdfe23c8_3 conda-forge
libasprintf-devel 0.22.5 hdfe23c8_3 conda-forge
libavif 0.11.1 h22361c6_2 conda-forge
libblas 3.9.0 20_osx64_openblas conda-forge
libbrotlicommon 1.0.9 hb7f2c08_9 conda-forge
libbrotlidec 1.0.9 hb7f2c08_9 conda-forge
libbrotlienc 1.0.9 hb7f2c08_9 conda-forge
libcblas 3.9.0 20_osx64_openblas conda-forge
libclang 18.1.1 pypi_0 pypi
libclang13 16.0.1 default_h395b6a0_0 conda-forge
libcurl 7.87.0 haf73cf8_0 conda-forge
libcxx 19.1.2 hf95d169_0 conda-forge
libdeflate 1.14 hb7f2c08_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libev 4.33 h10d778d_2 conda-forge
libexpat 2.6.3 hac325c4_0 conda-forge
libffi 3.4.2 h0d85af4_5 conda-forge
libgettextpo 0.22.5 hdfe23c8_3 conda-forge
libgettextpo-devel 0.22.5 hdfe23c8_3 conda-forge
libgfortran 5.0.0 13_2_0_h97931a8_3 conda-forge
libgfortran5 13.2.0 h2873a65_3 conda-forge
libglib 2.80.2 h0f68cf7_0 conda-forge
libiconv 1.17 hd75f5a5_2 conda-forge
libidn2 2.3.7 h10d778d_0 conda-forge
libintl 0.22.5 hdfe23c8_3 conda-forge
libintl-devel 0.22.5 hdfe23c8_3 conda-forge
liblapack 3.9.0 20_osx64_openblas conda-forge
liblapacke 3.9.0 20_osx64_openblas conda-forge
libllvm13 13.0.1 h64f94b2_2 conda-forge
libllvm16 16.0.1 h7001e86_0 conda-forge
libnghttp2 1.51.0 h0dd9d14_0 conda-forge
libogg 1.3.5 hfdf4475_0 conda-forge
libopenblas 0.3.25 openmp_hfef2a42_0 conda-forge
libopencv 4.6.0 py39h93c2317_3 conda-forge
libopus 1.3.1 hc929b4f_1 conda-forge
libpng 1.6.43 h92b6c6a_0 conda-forge
libpq 15.1 hdbdeef1_3 conda-forge
libprotobuf 3.20.3 hbc0c0cd_0 conda-forge
libsodium 1.0.18 hbcb3906_1 conda-forge
libsqlite 3.46.0 h1b8f9f3_0 conda-forge
libssh2 1.10.0 h7535e13_3 conda-forge
libtasn1 4.19.0 hb7f2c08_0 conda-forge
libtiff 4.4.0 h6268bbc_5 conda-forge
libunistring 0.9.10 h0d85af4_0 conda-forge
libvorbis 1.3.7 h046ec9c_0 conda-forge
libvpx 1.11.0 he49afe7_3 conda-forge
libwebp-base 1.4.0 h10d778d_0 conda-forge
libxcb 1.13 h0d85af4_1004 conda-forge
libxml2 2.10.3 h201ad9d_4 conda-forge
libxslt 1.1.37 h5d22bc9_0 conda-forge
libzlib 1.2.13 h87427d6_6 conda-forge
libzopfli 1.0.3 h046ec9c_0 conda-forge
llvm-openmp 19.1.2 hf78d878_0 conda-forge
lz4-c 1.9.4 hf0c8a7f_0 conda-forge
markdown 3.6 pyhd8ed1ab_0 conda-forge
markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge
markupsafe 3.0.2 py39h20cc651_0 conda-forge
matplotlib-base 3.8.4 py39hfca4cae_2 conda-forge
mdurl 0.1.2 pyhd8ed1ab_0 conda-forge
ml-dtypes 0.5.0 pypi_0 pypi
multidict 6.1.0 py39h781ac47_1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.32 h7ebae80_0 conda-forge
mysql-libs 8.0.32 hc37e033_0 conda-forge
ncurses 6.5 hf036a51_1 conda-forge
ndx-pose 0.1.1 pypi_0 pypi
nettle 3.9.1 h8e11ae5_0 conda-forge
networkx 3.2.1 pyhd8ed1ab_0 conda-forge
nixio 1.5.3 pypi_0 pypi
nspr 4.36 h97d8b74_0 conda-forge
nss 3.100 h6606ded_0 conda-forge
numexpr 2.10.0 py39hbb604f3_0 conda-forge
numpy 1.23.0 pypi_0 pypi
oauthlib 3.2.2 pyhd8ed1ab_0 conda-forge
opencv 4.6.0 py39h6e9494a_3 conda-forge
openh264 2.3.1 hf0c8a7f_2 conda-forge
openjpeg 2.5.0 h5d0d7b0_1 conda-forge
openssl 1.1.1w h8a1eda9_0 conda-forge
opt_einsum 3.4.0 pyhd8ed1ab_0 conda-forge
p11-kit 0.24.1 h65f8906_0 conda-forge
packaging 24.1 pyhd8ed1ab_0 conda-forge
pandas 2.2.3 py39h88a5ddd_1 conda-forge
patsy 0.5.6 pyhd8ed1ab_0 conda-forge
pcre2 10.43 h0ad2156_0 conda-forge
pillow 9.2.0 py39h35d4919_3 conda-forge
pip 24.2 pyh8b19718_1 conda-forge
pixman 0.43.4 h73e2aa4_0 conda-forge
propcache 0.2.0 py39h06d86d0_2 conda-forge
protobuf 3.20.3 py39h7a8716b_1 conda-forge
psutil 6.1.0 py39h296a897_0 conda-forge
pthread-stubs 0.4 h00291cd_1002 conda-forge
py-opencv 4.6.0 py39h71a6800_3 conda-forge
pyasn1 0.6.1 pyhd8ed1ab_1 conda-forge
pyasn1-modules 0.4.1 pyhd8ed1ab_0 conda-forge
pycparser 2.22 pyhd8ed1ab_0 conda-forge
pygments 2.18.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.9.0 pyhd8ed1ab_1 conda-forge
pykalman 0.9.7 pyhd8ed1ab_0 conda-forge
pynwb 2.5.0 pypi_0 pypi
pyopenssl 23.2.0 pyhd8ed1ab_1 conda-forge
pyparsing 3.2.0 pyhd8ed1ab_1 conda-forge
pyside2 5.15.8 py39heedc0ee_2 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.7.0 py39hc15ac9a_3 conda-forge
python 3.9.15 h531fd05_0_cpython conda-forge
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-rapidjson 1.20 py39h09c4c31_0 conda-forge
python-tzdata 2024.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 5_cp39 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge
pywavelets 1.6.0 py39hb943cd9_0 conda-forge
pyyaml 6.0.2 py39h06d86d0_1 conda-forge
pyzmq 26.2.0 py39ha6bd863_0 conda-forge
qimage2ndarray 1.10.0 pypi_0 pypi
qt-main 5.15.8 h1d3b3f8_6 conda-forge
qtpy 2.4.1 pyhd8ed1ab_0 conda-forge
re2 2022.06.01 hb486fe8_1 conda-forge
readline 8.2 h9e318b2_1 conda-forge
referencing 0.30.2 pypi_0 pypi
requests 2.32.3 pyhd8ed1ab_0 conda-forge
requests-oauthlib 2.0.0 pyhd8ed1ab_0 conda-forge
rich 13.9.3 pyhd8ed1ab_0 conda-forge
rpds-py 0.10.3 pypi_0 pypi
rsa 4.9 pyhd8ed1ab_0 conda-forge
ruamel-yaml 0.17.32 pypi_0 pypi
ruamel-yaml-clib 0.2.7 pypi_0 pypi
scikit-image 0.24.0 py39hbb604f3_1 conda-forge
scikit-learn 1.0 py39hd2caeff_1 conda-forge
scikit-video 1.1.11 pyh24bf2e0_0 conda-forge
scipy 1.9.0 py39h29d19b3_0 conda-forge
seaborn 0.13.2 hd8ed1ab_2 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_2 conda-forge
segmentation-models 1.0.1 pypi_0 pypi
setuptools 75.1.0 pyhd8ed1ab_0 conda-forge
shapely 2.0.6 py39hfde7aa9_2 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sleap 1.3.3 pypi_0 pypi
snappy 1.1.10 h6dc393e_1 conda-forge
sqlite 3.46.0 h28673e1_0 conda-forge
statsmodels 0.14.4 py39hff9a475_0 conda-forge
svt-av1 1.4.1 hf0c8a7f_0 conda-forge
tensorboard 2.12.3 pypi_0 pypi
tensorboard-data-server 0.7.2 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pyhd8ed1ab_0 conda-forge
tensorflow 2.9.1 cpu_py39hb0a6171_0 conda-forge
tensorflow-estimator 2.12.0 pypi_0 pypi
tensorflow-hub 0.12.0 pyhca92ed8_0 conda-forge
tensorflow-io-gcs-filesystem 0.37.1 pypi_0 pypi
tensorflow-macos 2.12.0 pypi_0 pypi
tensorflow-metal 1.0.0 pypi_0 pypi
termcolor 2.5.0 pyhd8ed1ab_0 conda-forge
threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge
tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge
tk 8.6.13 h1abcd95_1 conda-forge
typing-extensions 4.12.2 hd8ed1ab_0 conda-forge
typing_extensions 4.12.2 pyha770c72_0 conda-forge
tzdata 2024b hc8b5060_0 conda-forge
tzlocal 5.0.1 pypi_0 pypi
unicodedata2 15.1.0 py39h296a897_1 conda-forge
urllib3 2.2.3 pyhd8ed1ab_0 conda-forge
werkzeug 3.0.6 pyhd8ed1ab_0 conda-forge
wheel 0.44.0 pyhd8ed1ab_0 conda-forge
wrapt 1.14.1 pypi_0 pypi
x264 1!164.3095 h775f41a_2 conda-forge
x265 3.5 hbb4e6a2_3 conda-forge
xorg-libxau 1.0.11 h00291cd_1 conda-forge
xorg-libxdmcp 1.1.5 h00291cd_0 conda-forge
xz 5.2.6 h775f41a_0 conda-forge
yaml 0.2.5 h0d85af4_2 conda-forge
yarl 1.16.0 py39h296a897_0 conda-forge
zeromq 4.3.5 h93d8f39_0 conda-forge
zfp 1.0.1 h469392a_2 conda-forge
zipp 3.20.2 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h87427d6_6 conda-forge
zlib-ng 2.0.7 hb7f2c08_0 conda-forge
zstandard 0.23.0 py39hc23f734_1 conda-forge
zstd 1.5.6 h915ae27_0 conda-forge
Logs
==========SYSTEM==========
utc: 2024-11-04 16:16:30.456948
python: 3.9.15
system: Darwin, x86_64, 23.3.0, Darwin Kernel Version 23.3.0: Wed Dec 20 21:28:58 PST 2023; root:xnu-10002.81.5~7/RELEASE_X86_64
path: /Users/dcclab/miniforge3/envs/sleap/bin:/Users/dcclab/miniforge3/condabin:/usr/local/bin:/usr/local/sbin:/Library/Frameworks/Python.framework/Versions/3.10/bin:/usr/local/mysql/bin:/opt/anaconda3/bin:/opt/local/bin:/opt/local/sbin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin
==========IMPORTS==========
sleap import: True
sleap path: /Users/dcclab/miniforge3/envs/sleap/lib/python3.9/site-packages/sleap/__init__.py
sleap version: 1.3.3
pyside2 import: True
pyside path: /Users/dcclab/miniforge3/envs/sleap/lib/python3.9/site-packages/PySide2/__init__.py
successfully created PySide2.QtWidgets.QApplication instance
pyside6 import: False
cv2 import: True
==========GIT==========
cf3f7f1dfa1a193055f5526c95b8cd94084570bd
Valerie-Train-SLEAP-with-multanimal-bottom-up-(better-comparison-with-DeepLabCut)
==========TENSORFLOW==========
tensorflow import: True
tensorflow version: 2.12.0
tensorflow path: /Users/dcclab/miniforge3/envs/sleap/lib/python3.9/site-packages/tensorflow/__init__.py
gpus: [PhysicalDevice(name='/physical_device:GPU:0', device_type='GPU')]
==========CONDA==========
# packages in environment at /Users/dcclab/miniforge3/envs/sleap:
#
# Name Version Build Channel
abseil-cpp 20211102.0 hddbf539_3 conda-forge
absl-py 2.1.0 pyhd8ed1ab_0 conda-forge
aiohappyeyeballs 2.4.3 pyhd8ed1ab_0 conda-forge
aiohttp 3.10.10 py39h33701b3_0 conda-forge
aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge
aom 3.5.0 hf0c8a7f_0 conda-forge
astunparse 1.6.3 pyhd8ed1ab_2 conda-forge
async-timeout 4.0.3 pyhd8ed1ab_0 conda-forge
attrs 23.1.0 pypi_0 pypi
blinker 1.8.2 pyhd8ed1ab_0 conda-forge
blosc 1.21.5 heccf04b_0 conda-forge
brotli 1.0.9 hb7f2c08_9 conda-forge
brotli-bin 1.0.9 hb7f2c08_9 conda-forge
brotli-python 1.0.9 py39h7a8716b_9 conda-forge
brunsli 0.1 h046ec9c_0 conda-forge
bzip2 1.0.8 hfdf4475_7 conda-forge
c-ares 1.34.2 h32b1619_0 conda-forge
c-blosc2 2.12.0 h0ae8482_0 conda-forge
ca-certificates 2024.8.30 h8857fd0_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 5.5.0 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 h904041c_1014 conda-forge
cattrs 1.1.1 pyhd8ed1ab_0 conda-forge
certifi 2024.8.30 pyhd8ed1ab_0 conda-forge
cffi 1.17.1 py39h8ddeee6_0 conda-forge
cfitsio 4.2.0 hd56cc12_0 conda-forge
charls 2.3.4 he49afe7_0 conda-forge
charset-normalizer 3.4.0 pyhd8ed1ab_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
contourpy 1.2.1 py39h0ca7971_0 conda-forge
cryptography 39.0.0 py39h7eb6a14_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dav1d 1.2.1 h0dc2134_0 conda-forge
efficientnet 1.0.0 pypi_0 pypi
expat 2.6.3 hac325c4_0 conda-forge
ffmpeg 4.4.2 gpl_h8b4fe81_112 conda-forge
flatbuffers 24.3.25 pypi_0 pypi
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.14.2 h5bb23bf_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
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freetype 2.12.1 h60636b9_2 conda-forge
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glib 2.80.2 h0f68cf7_0 conda-forge
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gnutls 3.7.9 h1951705_0 conda-forge
google-auth 2.35.0 pyhff2d567_0 conda-forge
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google-pasta 0.2.0 pyhd8ed1ab_1 conda-forge
graphite2 1.3.13 h73e2aa4_1003 conda-forge
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gst-plugins-base 1.22.9 h3fb38fc_1 conda-forge
gstreamer 1.22.9 hf63bbb8_1 conda-forge
h2 4.1.0 pyhd8ed1ab_0 conda-forge
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hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge
icu 70.1 h96cf925_0 conda-forge
idna 3.10 pyhd8ed1ab_0 conda-forge
image-classifiers 1.0.0 pypi_0 pypi
imagecodecs 2022.9.26 py39h8036967_4 conda-forge
imageio 2.36.0 pyh12aca89_1 conda-forge
imgaug 0.4.0 pyhd8ed1ab_1 conda-forge
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 8.5.0 pyha770c72_0 conda-forge
importlib-resources 6.4.5 pyhd8ed1ab_0 conda-forge
importlib_resources 6.4.5 pyhd8ed1ab_0 conda-forge
jasper 2.0.33 h7c6fec8_1 conda-forge
jax 0.4.30 pypi_0 pypi
jaxlib 0.4.30 pypi_0 pypi
joblib 1.4.2 pyhd8ed1ab_0 conda-forge
jpeg 9e hb7f2c08_3 conda-forge
jsmin 3.0.1 pyhd8ed1ab_0 conda-forge
jsonpickle 1.2 py_0 conda-forge
jsonschema 4.19.0 pypi_0 pypi
jsonschema-specifications 2023.7.1 pypi_0 pypi
jxrlib 1.1 h10d778d_3 conda-forge
keras 2.12.0 pypi_0 pypi
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pyhd8ed1ab_0 conda-forge
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krb5 1.20.1 h0165f36_0 conda-forge
lame 3.100 hb7f2c08_1003 conda-forge
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lazy_loader 0.4 pyhd8ed1ab_1 conda-forge
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libclang 18.1.1 pypi_0 pypi
libclang13 16.0.1 default_h395b6a0_0 conda-forge
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libedit 3.1.20191231 h0678c8f_2 conda-forge
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libglib 2.80.2 h0f68cf7_0 conda-forge
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libintl 0.22.5 hdfe23c8_3 conda-forge
libintl-devel 0.22.5 hdfe23c8_3 conda-forge
liblapack 3.9.0 20_osx64_openblas conda-forge
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libogg 1.3.5 hfdf4475_0 conda-forge
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libopus 1.3.1 hc929b4f_1 conda-forge
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libpq 15.1 hdbdeef1_3 conda-forge
libprotobuf 3.20.3 hbc0c0cd_0 conda-forge
libsodium 1.0.18 hbcb3906_1 conda-forge
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libssh2 1.10.0 h7535e13_3 conda-forge
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libtiff 4.4.0 h6268bbc_5 conda-forge
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libvorbis 1.3.7 h046ec9c_0 conda-forge
libvpx 1.11.0 he49afe7_3 conda-forge
libwebp-base 1.4.0 h10d778d_0 conda-forge
libxcb 1.13 h0d85af4_1004 conda-forge
libxml2 2.10.3 h201ad9d_4 conda-forge
libxslt 1.1.37 h5d22bc9_0 conda-forge
libzlib 1.2.13 h87427d6_6 conda-forge
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llvm-openmp 19.1.2 hf78d878_0 conda-forge
lz4-c 1.9.4 hf0c8a7f_0 conda-forge
markdown 3.6 pyhd8ed1ab_0 conda-forge
markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge
markupsafe 3.0.2 py39h20cc651_0 conda-forge
matplotlib-base 3.8.4 py39hfca4cae_2 conda-forge
mdurl 0.1.2 pyhd8ed1ab_0 conda-forge
ml-dtypes 0.5.0 pypi_0 pypi
multidict 6.1.0 py39h781ac47_1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.32 h7ebae80_0 conda-forge
mysql-libs 8.0.32 hc37e033_0 conda-forge
ncurses 6.5 hf036a51_1 conda-forge
ndx-pose 0.1.1 pypi_0 pypi
nettle 3.9.1 h8e11ae5_0 conda-forge
networkx 3.2.1 pyhd8ed1ab_0 conda-forge
nixio 1.5.3 pypi_0 pypi
nspr 4.36 h97d8b74_0 conda-forge
nss 3.100 h6606ded_0 conda-forge
numexpr 2.10.0 py39hbb604f3_0 conda-forge
numpy 1.23.0 pypi_0 pypi
oauthlib 3.2.2 pyhd8ed1ab_0 conda-forge
opencv 4.6.0 py39h6e9494a_3 conda-forge
openh264 2.3.1 hf0c8a7f_2 conda-forge
openjpeg 2.5.0 h5d0d7b0_1 conda-forge
openssl 1.1.1w h8a1eda9_0 conda-forge
opt_einsum 3.4.0 pyhd8ed1ab_0 conda-forge
p11-kit 0.24.1 h65f8906_0 conda-forge
packaging 24.1 pyhd8ed1ab_0 conda-forge
pandas 2.2.3 py39h88a5ddd_1 conda-forge
patsy 0.5.6 pyhd8ed1ab_0 conda-forge
pcre2 10.43 h0ad2156_0 conda-forge
pillow 9.2.0 py39h35d4919_3 conda-forge
pip 24.2 pyh8b19718_1 conda-forge
pixman 0.43.4 h73e2aa4_0 conda-forge
propcache 0.2.0 py39h06d86d0_2 conda-forge
protobuf 3.20.3 py39h7a8716b_1 conda-forge
psutil 6.1.0 py39h296a897_0 conda-forge
pthread-stubs 0.4 h00291cd_1002 conda-forge
py-opencv 4.6.0 py39h71a6800_3 conda-forge
pyasn1 0.6.1 pyhd8ed1ab_1 conda-forge
pyasn1-modules 0.4.1 pyhd8ed1ab_0 conda-forge
pycparser 2.22 pyhd8ed1ab_0 conda-forge
pygments 2.18.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.9.0 pyhd8ed1ab_1 conda-forge
pykalman 0.9.7 pyhd8ed1ab_0 conda-forge
pynwb 2.5.0 pypi_0 pypi
pyopenssl 23.2.0 pyhd8ed1ab_1 conda-forge
pyparsing 3.2.0 pyhd8ed1ab_1 conda-forge
pyside2 5.15.8 py39heedc0ee_2 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.7.0 py39hc15ac9a_3 conda-forge
python 3.9.15 h531fd05_0_cpython conda-forge
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-rapidjson 1.20 py39h09c4c31_0 conda-forge
python-tzdata 2024.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 5_cp39 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge
pywavelets 1.6.0 py39hb943cd9_0 conda-forge
pyyaml 6.0.2 py39h06d86d0_1 conda-forge
pyzmq 26.2.0 py39ha6bd863_0 conda-forge
qimage2ndarray 1.10.0 pypi_0 pypi
qt-main 5.15.8 h1d3b3f8_6 conda-forge
qtpy 2.4.1 pyhd8ed1ab_0 conda-forge
re2 2022.06.01 hb486fe8_1 conda-forge
readline 8.2 h9e318b2_1 conda-forge
referencing 0.30.2 pypi_0 pypi
requests 2.32.3 pyhd8ed1ab_0 conda-forge
requests-oauthlib 2.0.0 pyhd8ed1ab_0 conda-forge
rich 13.9.3 pyhd8ed1ab_0 conda-forge
rpds-py 0.10.3 pypi_0 pypi
rsa 4.9 pyhd8ed1ab_0 conda-forge
ruamel-yaml 0.17.32 pypi_0 pypi
ruamel-yaml-clib 0.2.7 pypi_0 pypi
scikit-image 0.24.0 py39hbb604f3_1 conda-forge
scikit-learn 1.0 py39hd2caeff_1 conda-forge
scikit-video 1.1.11 pyh24bf2e0_0 conda-forge
scipy 1.9.0 py39h29d19b3_0 conda-forge
seaborn 0.13.2 hd8ed1ab_2 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_2 conda-forge
segmentation-models 1.0.1 pypi_0 pypi
setuptools 75.1.0 pyhd8ed1ab_0 conda-forge
shapely 2.0.6 py39hfde7aa9_2 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sleap 1.3.3 pypi_0 pypi
snappy 1.1.10 h6dc393e_1 conda-forge
sqlite 3.46.0 h28673e1_0 conda-forge
statsmodels 0.14.4 py39hff9a475_0 conda-forge
svt-av1 1.4.1 hf0c8a7f_0 conda-forge
tensorboard 2.12.3 pypi_0 pypi
tensorboard-data-server 0.7.2 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pyhd8ed1ab_0 conda-forge
tensorflow 2.9.1 cpu_py39hb0a6171_0 conda-forge
tensorflow-estimator 2.12.0 pypi_0 pypi
tensorflow-hub 0.12.0 pyhca92ed8_0 conda-forge
tensorflow-io-gcs-filesystem 0.37.1 pypi_0 pypi
tensorflow-macos 2.12.0 pypi_0 pypi
tensorflow-metal 1.0.0 pypi_0 pypi
termcolor 2.5.0 pyhd8ed1ab_0 conda-forge
threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge
tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge
tk 8.6.13 h1abcd95_1 conda-forge
typing-extensions 4.12.2 hd8ed1ab_0 conda-forge
typing_extensions 4.12.2 pyha770c72_0 conda-forge
tzdata 2024b hc8b5060_0 conda-forge
tzlocal 5.0.1 pypi_0 pypi
unicodedata2 15.1.0 py39h296a897_1 conda-forge
urllib3 2.2.3 pyhd8ed1ab_0 conda-forge
werkzeug 3.0.6 pyhd8ed1ab_0 conda-forge
wheel 0.44.0 pyhd8ed1ab_0 conda-forge
wrapt 1.14.1 pypi_0 pypi
x264 1!164.3095 h775f41a_2 conda-forge
x265 3.5 hbb4e6a2_3 conda-forge
xorg-libxau 1.0.11 h00291cd_1 conda-forge
xorg-libxdmcp 1.1.5 h00291cd_0 conda-forge
xz 5.2.6 h775f41a_0 conda-forge
yaml 0.2.5 h0d85af4_2 conda-forge
yarl 1.16.0 py39h296a897_0 conda-forge
zeromq 4.3.5 h93d8f39_0 conda-forge
zfp 1.0.1 h469392a_2 conda-forge
zipp 3.20.2 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h87427d6_6 conda-forge
zlib-ng 2.0.7 hb7f2c08_0 conda-forge
zstandard 0.23.0 py39hc23f734_1 conda-forge
zstd 1.5.6 h915ae27_0 conda-forge
==========PIP==========
absl-py @ file:///home/conda/feedstock_root/build_artifacts/absl-py_1705494584803/work
aiohappyeyeballs @ file:///home/conda/feedstock_root/build_artifacts/aiohappyeyeballs_1727779797566/work
aiohttp @ file:///Users/runner/miniforge3/conda-bld/aiohttp_1728629000337/work
aiosignal @ file:///home/conda/feedstock_root/build_artifacts/aiosignal_1667935791922/work
astunparse @ file:///home/conda/feedstock_root/build_artifacts/astunparse_1728923142236/work
async-timeout @ file:///home/conda/feedstock_root/build_artifacts/async-timeout_1691763562544/work
attrs==23.1.0
blinker @ file:///home/conda/feedstock_root/build_artifacts/blinker_1715091184126/work
Brotli @ file:///Users/runner/miniforge3/conda-bld/brotli-split_1687884187023/work
cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
cachetools @ file:///home/conda/feedstock_root/build_artifacts/cachetools_1724028158384/work
cattrs @ file:///home/conda/feedstock_root/build_artifacts/cattrs_1604136207372/work
certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1725278078093/work/certifi
cffi @ file:///Users/runner/miniforge3/conda-bld/cffi_1725560567968/work
charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1728479282467/work
click @ file:///home/conda/feedstock_root/build_artifacts/click_1692311806742/work
contourpy @ file:///Users/runner/miniforge3/conda-bld/contourpy_1712429956050/work
cryptography @ file:///Users/runner/miniforge3/conda-bld/cryptography-split_1672672491497/work
cycler @ file:///home/conda/feedstock_root/build_artifacts/cycler_1696677705766/work
efficientnet==1.0.0
flatbuffers==24.3.25
fonttools @ file:///Users/runner/miniforge3/conda-bld/fonttools_1729530356476/work
frozenlist @ file:///Users/runner/miniforge3/conda-bld/frozenlist_1729699486805/work
gast @ file:///home/conda/feedstock_root/build_artifacts/gast_1596839682936/work
google-auth @ file:///home/conda/feedstock_root/build_artifacts/google-auth_1726832896641/work
google-auth-oauthlib==1.0.0
google-pasta @ file:///home/conda/feedstock_root/build_artifacts/google-pasta_1722873999312/work
grpcio==1.67.1
h2 @ file:///home/conda/feedstock_root/build_artifacts/h2_1634280454336/work
h5py @ file:///Users/runner/miniforge3/conda-bld/h5py_1674499365073/work
hdmf==3.9.0
hpack==4.0.0
hyperframe @ file:///home/conda/feedstock_root/build_artifacts/hyperframe_1619110129307/work
idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1726459485162/work
image-classifiers==1.0.0
imagecodecs @ file:///Users/runner/miniforge3/conda-bld/imagecodecs_1668867656682/work
imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1729190692267/work
imgaug @ file:///home/conda/feedstock_root/build_artifacts/imgaug_1640909786103/work
imgstore==0.2.9
importlib_metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1726082825846/work
importlib_resources @ file:///home/conda/feedstock_root/build_artifacts/importlib_resources_1725921340658/work
jax==0.4.30
jaxlib==0.4.30
joblib @ file:///home/conda/feedstock_root/build_artifacts/joblib_1714665484399/work
jsmin @ file:///home/conda/feedstock_root/build_artifacts/jsmin_1642532731678/work
jsonpickle==1.2
jsonschema==4.19.0
jsonschema-specifications==2023.7.1
keras==2.12.0
Keras-Applications==1.0.8
Keras-Preprocessing @ file:///home/conda/feedstock_root/build_artifacts/keras-preprocessing_1610713559828/work
kiwisolver @ file:///Users/runner/miniforge3/conda-bld/kiwisolver_1725459195356/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy-loader_1723774329602/work
libclang==18.1.1
Markdown @ file:///home/conda/feedstock_root/build_artifacts/markdown_1710435156458/work
markdown-it-py @ file:///home/conda/feedstock_root/build_artifacts/markdown-it-py_1686175045316/work
MarkupSafe @ file:///Users/runner/miniforge3/conda-bld/markupsafe_1729351318299/work
matplotlib @ file:///Users/runner/miniforge3/conda-bld/matplotlib-suite_1715976186715/work
mdurl @ file:///home/conda/feedstock_root/build_artifacts/mdurl_1704317613764/work
ml_dtypes==0.5.0
multidict @ file:///Users/runner/miniforge3/conda-bld/multidict_1729065493631/work
munkres==1.1.4
ndx-pose==0.1.1
networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1698504735452/work
nixio==1.5.3
numexpr @ file:///Users/runner/miniforge3/conda-bld/numexpr_1716812180135/work
numpy==1.23.0
oauthlib @ file:///home/conda/feedstock_root/build_artifacts/oauthlib_1666056362788/work
opencv-python==4.6.0
opt_einsum @ file:///home/conda/feedstock_root/build_artifacts/opt_einsum_1727392354687/work
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1718189413536/work
pandas @ file:///Users/runner/miniforge3/conda-bld/pandas_1726878426767/work
patsy @ file:///home/conda/feedstock_root/build_artifacts/patsy_1704469236901/work
Pillow @ file:///Users/runner/miniforge3/conda-bld/pillow_1666920647802/work
propcache @ file:///Users/runner/miniforge3/conda-bld/propcache_1728545746686/work
protobuf==3.20.3
psutil @ file:///Users/runner/miniforge3/conda-bld/psutil_1729847081697/work
pyasn1 @ file:///home/conda/feedstock_root/build_artifacts/pyasn1_1726839225972/work
pyasn1_modules @ file:///home/conda/feedstock_root/build_artifacts/pyasn1-modules_1726029546107/work
pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1711811537435/work
Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1714846767233/work
PyJWT @ file:///home/conda/feedstock_root/build_artifacts/pyjwt_1722701264352/work
pykalman @ file:///home/conda/feedstock_root/build_artifacts/pykalman_1711547707628/work
pynwb==2.5.0
pyOpenSSL @ file:///home/conda/feedstock_root/build_artifacts/pyopenssl_1685514481738/work
pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1728880423364/work
PySide2==5.15.8
PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1661604839144/work
python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1709299778482/work
python-rapidjson @ file:///Users/runner/miniforge3/conda-bld/python-rapidjson_1722901885195/work
pytz @ file:///home/conda/feedstock_root/build_artifacts/pytz_1706886791323/work
pyu2f @ file:///home/conda/feedstock_root/build_artifacts/pyu2f_1604248910016/work
PyWavelets==1.6.0
PyYAML @ file:///Users/runner/miniforge3/conda-bld/pyyaml_1725456176118/work
pyzmq @ file:///Users/runner/miniforge3/conda-bld/pyzmq_1724399128390/work
qimage2ndarray==1.10.0
QtPy @ file:///home/conda/feedstock_root/build_artifacts/qtpy_1698112029416/work
referencing==0.30.2
requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1717057054362/work
requests-oauthlib @ file:///home/conda/feedstock_root/build_artifacts/requests-oauthlib_1711290127547/work
rich @ file:///home/conda/feedstock_root/build_artifacts/rich_1729622917073/work/dist
rpds-py==0.10.3
rsa @ file:///home/conda/feedstock_root/build_artifacts/rsa_1658328885051/work
ruamel.yaml==0.17.32
ruamel.yaml.clib==0.2.7
scikit-image @ file:///Users/runner/miniforge3/conda-bld/scikit-image_1719499435765/work/dist/scikit_image-0.24.0-cp39-cp39-macosx_10_13_x86_64.whl#sha256=dc1cb9c710a4541be80ed6d8503634ad2ba466ccd9a3abe9d2e6617fe07dc874
scikit-learn @ file:///Users/runner/miniforge3/conda-bld/scikit-learn_1632611470401/work
scikit-video==1.1.11
scipy==1.9.0
seaborn @ file:///home/conda/feedstock_root/build_artifacts/seaborn-split_1714494649443/work
segmentation-models==1.0.1
shapely @ file:///Users/runner/miniforge3/conda-bld/shapely_1727273432006/work
shiboken2==5.15.8
six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work
sleap==1.3.3
statsmodels @ file:///Users/runner/miniforge3/conda-bld/statsmodels_1727986739068/work
tables @ file:///Users/runner/miniforge3/conda-bld/pytables_1666850070504/work
tensorboard==2.12.3
tensorboard-data-server==0.7.2
tensorboard-plugin-wit @ file:///home/conda/feedstock_root/build_artifacts/tensorboard-plugin-wit_1641458951060/work/tensorboard_plugin_wit-1.8.1-py3-none-any.whl
tensorflow-estimator==2.12.0
tensorflow-hub @ file:///home/conda/feedstock_root/build_artifacts/tensorflow-hub_1618768305670/work/wheel_dir/tensorflow_hub-0.12.0-py2.py3-none-any.whl
tensorflow-io-gcs-filesystem==0.37.1
tensorflow-macos==2.12.0
tensorflow-metal==1.0.0
termcolor @ file:///home/conda/feedstock_root/build_artifacts/termcolor_1728288976871/work
threadpoolctl @ file:///home/conda/feedstock_root/build_artifacts/threadpoolctl_1714400101435/work
tifffile @ file:///home/conda/feedstock_root/build_artifacts/tifffile_1665588749940/work
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/typing_extensions_1717802530399/work
tzdata @ file:///home/conda/feedstock_root/build_artifacts/python-tzdata_1727140567071/work
tzlocal==5.0.1
unicodedata2 @ file:///Users/runner/miniforge3/conda-bld/unicodedata2_1729704644728/work
urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1726496430923/work
Werkzeug @ file:///home/conda/feedstock_root/build_artifacts/werkzeug_1729884156362/work
wrapt==1.14.1
yarl @ file:///Users/runner/miniforge3/conda-bld/yarl_1729798487102/work
zipp @ file:///home/conda/feedstock_root/build_artifacts/zipp_1726248574750/work
zstandard==0.23.0
==========NVIDIA==========
unable to locate nvidia-smi
Screenshots
How to reproduce
- Launch the GUI with
sleap-label - Open the project
- Predict > Run Training...
- Set the pipeline to Multi-animal bottom-up
- Validation fraction is set to 0.2
- No prediction for now
- I set the output with a name such as 20241104-MultianimalBottomUp
- Click on Run
- The error appears after around 10 seconds in the terminal
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