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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 509 116

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 19 12

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 24 3

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 13

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 10 2

  6. sleap-nn sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    Python 11 3

Repositories

Showing 10 of 62 repositories
  • lablink Public
    talmolab/lablink’s past year of commit activity
    Python 1 BSD-2-Clause 0 30 2 Updated Sep 14, 2025
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 509 BSD-3-Clause-Clear 116 85 (4 issues need help) 31 Updated Sep 13, 2025
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 11 GPL-3.0 3 18 6 Updated Sep 12, 2025
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 10 BSD-3-Clause 2 16 4 Updated Sep 11, 2025
  • webRTC-connect Public
    talmolab/webRTC-connect’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Sep 11, 2025
  • sleap-roots-analyze Public

    Standard trait analysis for traits from sleap-roots.

    talmolab/sleap-roots-analyze’s past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Sep 8, 2025
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 19 BSD-3-Clause 12 8 0 Updated Sep 7, 2025
  • movenet-dance-demo Public

    A real-time demo running on webcam feed that guides subject to move to match pre-defined target poses.

    talmolab/movenet-dance-demo’s past year of commit activity
    PureBasic 1 MIT 0 0 0 Updated Sep 3, 2025
  • sleap-roots-predict Public

    A lightweight CLI and library that uses sleap-nn for prediction and produces artifacts in the format expected by sleap-roots pipelines. Intended to interoperate with the sleap-roots model registry.

    talmolab/sleap-roots-predict’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 1 Updated Sep 1, 2025
  • webRTC-client Public

    webRTC client repo for pip package

    talmolab/webRTC-client’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Aug 25, 2025
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