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I was looking for a fast kmer counter and came across this as well as your package:
https://pirl.unc.edu/blog/shaking-the-rust-off-python-redox
I guess there's also needletail
which is older, on crates.io and hence more depended on, but yours uses rayon, so a better fit for the implementation at the link. Is that right?
This is also more recently maintained, just by you. 😄
Nice that you are still maintaining this starter project! I myself am starting to learn rust. It seems you have been hoping to implement hashmaps also. Let me know if you would like a contribution--please be warned, it is early days for me!
My use case is that I want to populate a large array with kmer counts from sequencing reads, likely from FASTQ files. Since that is supported by needletail
I might start there.
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