Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: Move NA values to end of table #124

Merged
merged 7 commits into from
Oct 18, 2024
Merged

fix: Move NA values to end of table #124

Changes from 1 commit
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
fb9239a
fix: Move NA values to end of table
fxwiegand Oct 16, 2024
f594b15
Update compare_diffexp.py
fxwiegand Oct 16, 2024
dca9161
Update compare_diffexp.py with dbg prints
fxwiegand Oct 16, 2024
69ef4d2
Update compare_diffexp.py
fxwiegand Oct 17, 2024
4776153
Update compare_diffexp.py
fxwiegand Oct 17, 2024
5f8dc17
refactor: Make meta comparison use proper logs
fxwiegand Oct 17, 2024
58d7cd5
Update compare_diffexp.py
fxwiegand Oct 17, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Update compare_diffexp.py
  • Loading branch information
@fxwiegand
fxwiegand authored Oct 17, 2024
commit 58d7cd5d9462312b1646e3db3c69412891663d1d
2 changes: 0 additions & 2 deletions workflow/scripts/compare_diffexp.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,6 @@ def prepare(df):
combined = combined.with_columns(
abs(pl.col(effect_x) - pl.col(effect_y)).alias("difference")
)
print(combined)
combined = (
combined.with_columns(
(-pl.col("pval_min").log(base=10) * pl.col("difference")).alias("pi_value")
Expand All @@ -73,7 +72,6 @@ def prepare(df):
)
.to_pandas()
)
print(combined)
combined.to_csv(snakemake.output[0], sep="\t", index=False)


Expand Down
Loading