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Commits on Aug 15, 2024

• feat: Improve datavzrd tables (#93)

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  3 peopleauthored
  93512b8

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Commits on Jul 17, 2024

• docs: Fix units configuration docs for bam files (#104)

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  fxwiegand

  authored
  9b193dc

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Commits on Jun 25, 2024

• docs: improve base_level explanation in config.yaml files (#101)

  dlaehnemann

  authored
  aa6ef04

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Commits on Jun 24, 2024

• docs: improve configs and configuration README.md (#99)

  dlaehnemann

  authored
  75168be

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Commits on Jun 13, 2024

• perf: datavzrd wrapper v3.12.1, offer-excel configurable, free disk space for CI, dynamic sleuth_init mem_mb, pure download rules as localrules (#92)

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  dlaehnemann

  and

  johanneskoester

  authored
  70850fb

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Commits on Jun 5, 2024

• feat: Allow bam input files (#94)

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  fxwiegand

  and

  johanneskoester

  authored
  4a1f983

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Commits on Sep 14, 2023

• fix: simpler three prime QuantSeq cutadapt setup (#78)

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  dlaehnemann

  authored
  ecc9ab7

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Commits on May 12, 2023

• feat: Support for 3-prime RNA sequencing (#62)

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  5 peopleauthored
  c06c573

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Commits on Feb 6, 2023

• fix: Feature/update cutadapt wrapper (#67)

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  Austin-s-h

  and

  dlaehnemann

  authored
  29d7967

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Commits on Dec 2, 2022

• fix: fix gene-level p-value adjustment (use Benjamini-Hochberg instead of Bonferroni-Holm) (#64)

  johanneskoester

  authored
  6ea1682

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Commits on Oct 11, 2022

• fix: correct default value for representative_transcripts and check for existence of path (#59)

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  johanneskoester

  authored
  a85b268

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Commits on Oct 5, 2022

• fix: fix default minimum p-value in fgsea (#61)

  johanneskoester

  authored
  a6a857d

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Commits on Mar 29, 2022

• feat: adapt to fgsea updates, configure fgsea precision by minimum achievable p-value

  johanneskoester

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  dcd77ca

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Commits on Feb 1, 2022

• adjust fgsea.R script to changes in fgsea() function interface (#55)

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  dlaehnemann

  authored
  39498d2

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Commits on Nov 21, 2021

• Update config.yaml

  johanneskoester

  authored
  db28f97

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Commits on Oct 8, 2021

• Implement canonical transcript support. (#46)

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  johanneskoester

  and

  tedil

  authored
  40e9aed

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Commits on Oct 5, 2021

• Differential splicing analysis. (#23)

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  johanneskoester

  authored
  55825a9

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Commits on Sep 17, 2021

• bump r-base and related package versions to R 4.1 (#50)

  tedil

  authored
  8083d61

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• Update README.md

  johanneskoester

  authored
  10e2599

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Commits on May 14, 2021

• automatically download reference (#43)

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  dlaehnemann

  authored
  33a562a

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Commits on May 11, 2021

• Migrate to new workflow usage (#41)

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  dlaehnemann

  authored
  e640a4d

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Commits on Mar 4, 2021

• fgsea.r: unnest leadingEdge and create correct columns for empty data (#28)

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  dlaehnemann

  authored
  e7054ec

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Commits on Mar 18, 2020

• Plots v2 (#14)

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  AntonieV

  authored
  2b768ba

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Commits on Jan 31, 2020

• fix tests for workflow created from template (#9)

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  dlaehnemann

  and

  johanneskoester

  authored
  6d36fb1

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Commits on Oct 29, 2019

• r-base to 3.6, default off (spia, fgsea, goatools), fix sleuth RAM problem (#6)

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  dlaehnemann

  authored and

  johanneskoester

  committed
  f13d09c

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Commits on Oct 14, 2019

• propagate back pipeline extensions from mouse dataset (#4)

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  dlaehnemann

  authored and

  johanneskoester

  committed
  53574e7

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