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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.4k 589

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 220 191

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 162 30

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 13

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 24

Repositories

Showing 10 of 60 repositories
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,442 MIT 589 1,095 (1 issue needs help) 92 Updated Apr 4, 2025
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 3 MIT 9 3 4 Updated Apr 4, 2025
  • snakemake-report-plugin-nanopub Public

    Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-nanopub’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 4, 2025
  • snakemake-lang-vscode-plugin Public

    Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

    snakemake/snakemake-lang-vscode-plugin’s past year of commit activity
    Python 15 MIT 16 10 2 Updated Apr 4, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 31 MIT 24 33 7 Updated Apr 4, 2025
  • snakemake-storage-plugin-s3 Public

    A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)

    snakemake/snakemake-storage-plugin-s3’s past year of commit activity
    Python 3 MIT 12 1 0 Updated Apr 4, 2025
  • snakemake-github-action Public

    A Github action for running a Snakemake workflow

    snakemake/snakemake-github-action’s past year of commit activity
    58 MIT 13 8 1 Updated Apr 4, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 220 191 22 30 Updated Apr 4, 2025
  • snakemake-executor-plugin-googlebatch Public

    Snakemake executor plugin for Google Batch

    snakemake/snakemake-executor-plugin-googlebatch’s past year of commit activity
    Python 4 MIT 6 10 4 Updated Apr 3, 2025
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt’s past year of commit activity
    Python 162 MIT 30 16 1 Updated Apr 2, 2025
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