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Sliding window improvements #931

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Sliding window improvements #931

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8f4b2cd
maintained to avoid any partial window at the beginning of the slice
mossishahi Nov 20, 2024
a8cc17e
- _optimize_tile_size function added to calculate the best tiles size…
mossishahi Dec 1, 2024
d40f4d1
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 25, 2024
4fe1dde
Merge branch 'main' into sliding-window-improvements
timtreis Jan 18, 2025
488034c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jan 18, 2025
0350e20
max_n_cells option debugged
mossishahi Feb 26, 2025
70b45ff
minor degbug
mossishahi Feb 26, 2025
12cb167
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 26, 2025
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2 changes: 0 additions & 2 deletions src/squidpy/pl/_spatial_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -466,15 +466,13 @@ def _set_color_source_vec(
color_source_vector = adata.raw.obs_vector(value_to_plot)
else:
color_source_vector = adata.obs_vector(value_to_plot, layer=layer)

if not isinstance(color_source_vector.dtype, CategoricalDtype):
return None, color_source_vector, False

color_source_vector = pd.Categorical(color_source_vector) # convert, e.g., `pd.Series`
categories = color_source_vector.categories
if groups is not None:
color_source_vector = color_source_vector.remove_categories(categories.difference(groups))

color_map = _get_palette(
adata,
cluster_key=value_to_plot,
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