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<code>sepal</code> numba compilation options changes the results significantly

Status: Open.

#1035 In scverse/squidpy;

· selmanozleyen opened on Sep 13, 2025

Function to QC H&amp;E images

enhancement ✨New feature or requestNew feature or request

image 🔬

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1034 In scverse/squidpy;

· timtreis opened on Sep 13, 2025

Precise Reproducibility Issue on <code>spatial_autocorr</code> fails on some tests because of numba kernels

Status: Open.

#1030 In scverse/squidpy;

· selmanozleyen opened on Sep 3, 2025

Nothing is displayed in the image, but I can display it normally using official data in the same environment.

Status: Open.

#1022 In scverse/squidpy;

· hwr9912 opened on Aug 11, 2025

multi-layer process operations for ImageContainer

Status: Open.

#1020 In scverse/squidpy;

· ibsafa opened on Aug 5, 2025

Deprecate the current napari implementation in favour of napari-spatialdata

enhancement ✨New feature or requestNew feature or request

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1018 In scverse/squidpy;

· timtreis opened on Jul 17, 2025

Function to remove points that don't fall into cell masks

enhancement ✨New feature or requestNew feature or request

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1017 In scverse/squidpy;

· timtreis opened on Jul 10, 2025

<code>spatial_neighbors</code> breaks when <code>transform='spectral'</code>

Status: Open.

#1014 In scverse/squidpy;

· tjbencomo opened on Jul 9, 2025

Function to subset the entire spatialdata object

enhancement ✨New feature or requestNew feature or request

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1007 In scverse/squidpy;

· timtreis opened on May 26, 2025

Ligrec convert mouse genome to human?

Status: Open.

#1003 In scverse/squidpy;

· RunyuXia opened on May 22, 2025

Error for sq.pl.spatial_scatter()

bug 🐛Something isn't workingSomething isn't working

plot 🌺related to plottingrelated to plotting

question ❓Further information is requestedFurther information is requested

Status: Open.

#999 In scverse/squidpy;

· mikijoyce opened on May 8, 2025

Leverage Pre-Existing Annotations for Analysis

question ❓Further information is requestedFurther information is requested

Status: Open.

#998 In scverse/squidpy;

· abadgerw opened on May 7, 2025