-
Notifications
You must be signed in to change notification settings - Fork 25
Add an example of GCH for molecular materials #171
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Conversation
|
|
|
Can you run the notebook so we can see the outputs? |
|
Looks like the doc builder does not honor |
|
Yes, unfortunately you have to also add this to docs/requirements.txt for now. This, issue will be fixed in #170. |
|
OK we can wait for #170 to be merged. Can someone instruct on how to set up data import? I guess we don't want to ad 5MB of features to the main repo. |
|
Also, is everyone happy with having try - except import clauses to show how one could compute features using rascaline? |
|
I would not against using a rascaline in an howto. What about in an extra howto guide? Personally, I don't like putting these |
OK, solved I think - hid the cells in nbsphinx, I don't think we can get an embedded chemiscope even though it'd be amazing. In all events, not needed for this PR |
|
OK to merge? |
|
|
||
|
|
||
| - Fingerprint Selection: | ||
| - Features and Samples Selection: |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Was this an intentional change?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Yes - the text and methods below refers to both features and samples, so it seemed more consistent to mention also samples in the title.
| def _linear_interpolator(points, values): | ||
| """ | ||
| Returns linear interpolater for unstructured D-D data. Tessellate the input point | ||
| Returns linear interpolator for unstructured D-D data. Tessellate the input point |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I typically don't like multiple types of changes within one PR, can you roll these into a separate one?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Sorry, no.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I am all for consistency but I'm not going to make a separate pull request to correct a couple of typos.
Two lingering things then should be good |
This is a simple but complete example of calculations of the GCH for a dataset of organic crystal polymorphs