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Description
please find the info below.
> pbmc_small <- AddMetaData(
+ object = pbmc_small,
+ metadata = cluster_letters,
+ col.name = 'letter.idents'
+ )
> head(x = pbmc_small@meta.data)
nGene nUMI orig.ident res.0.8 res.1 letter.idents
ATGCCAGAACGACT 47 70 SeuratProject 0 0 <NA>
CATGGCCTGTGCAT 52 85 SeuratProject 0 0 <NA>
GAACCTGATGAACC 50 87 SeuratProject 0 0 <NA>
TGACTGGATTCTCA 56 127 SeuratProject 0 0 <NA>
AGTCAGACTGCACA 53 173 SeuratProject 0 0 <NA>
TCTGATACACGTGT 48 70 SeuratProject 0 0 <NA>
> devtools::session_info()
Session info -----------------------------------------------------------------------------------
setting value
version R version 3.5.1 (2018-07-02)
system x86_64, darwin15.6.0
ui RStudio (1.2.1013)
language (EN)
collate en_US.UTF-8
tz America/New_York
date 2018-11-08
Packages ---------------------------------------------------------------------------------------
package * version date source
acepack 1.4.1 2016-10-29 CRAN (R 3.5.0)
ape 5.2 2018-09-24 CRAN (R 3.5.0)
assertthat 0.2.0 2017-04-11 cran (@0.2.0)
backports 1.1.2 2017-12-13 CRAN (R 3.5.0)
base * 3.5.1 2018-07-05 local
base64enc 0.1-3 2015-07-28 CRAN (R 3.5.0)
bibtex 0.4.2 2017-06-30 CRAN (R 3.5.0)
bindr 0.1.1 2018-03-13 cran (@0.1.1)
bindrcpp 0.2.2 2018-03-29 cran (@0.2.2)
bit 1.1-14 2018-05-29 CRAN (R 3.5.0)
bit64 0.9-7 2017-05-08 CRAN (R 3.5.0)
bitops 1.0-6 2013-08-17 CRAN (R 3.5.0)
broom 0.5.0 2018-07-17 CRAN (R 3.5.0)
caTools 1.17.1.1 2018-07-20 CRAN (R 3.5.0)
cellranger 1.1.0 2016-07-27 CRAN (R 3.5.0)
checkmate 1.8.5 2017-10-24 cran (@1.8.5)
class 7.3-14 2015-08-30 CRAN (R 3.5.1)
cli 1.0.1 2018-09-25 cran (@1.0.1)
cluster 2.0.7-1 2018-04-13 CRAN (R 3.5.1)
codetools 0.2-15 2016-10-05 CRAN (R 3.5.1)
colorspace 1.3-2 2016-12-14 cran (@1.3-2)
compiler 3.5.1 2018-07-05 local
cowplot * 0.9.3 2018-07-15 cran (@0.9.3)
crayon 1.3.4 2017-09-16 cran (@1.3.4)
data.table 1.11.8 2018-09-30 CRAN (R 3.5.0)
datasets * 3.5.1 2018-07-05 local
DEoptimR 1.0-8 2016-11-19 CRAN (R 3.5.0)
devtools 1.13.6 2018-06-27 CRAN (R 3.5.0)
digest 0.6.17 2018-09-12 CRAN (R 3.5.0)
diptest 0.75-7 2016-12-05 CRAN (R 3.5.0)
doSNOW 1.0.16 2017-12-13 CRAN (R 3.5.0)
doubletFinder * 1.0.0 2018-10-31 Github (chris-mcginnis-ucsf/doubletFinder@730e2f1)
dplyr * 0.7.6 2018-06-29 cran (@0.7.6)
dtw 1.20-1 2018-05-18 CRAN (R 3.5.0)
fitdistrplus 1.0-11 2018-09-10 CRAN (R 3.5.0)
flexmix 2.3-14 2017-04-28 CRAN (R 3.5.0)
forcats * 0.3.0 2018-02-19 CRAN (R 3.5.0)
foreach 1.4.4 2017-12-12 cran (@1.4.4)
foreign 0.8-70 2017-11-28 CRAN (R 3.5.1)
Formula 1.2-3 2018-05-03 CRAN (R 3.5.0)
fpc 2.1-11.1 2018-07-20 CRAN (R 3.5.0)
fs * 1.2.6 2018-08-23 CRAN (R 3.5.0)
gbRd 0.4-11 2012-10-01 CRAN (R 3.5.0)
gdata 2.18.0 2017-06-06 CRAN (R 3.5.0)
ggplot2 * 3.0.0 2018-07-03 cran (@3.0.0)
ggridges 0.5.1 2018-09-27 CRAN (R 3.5.0)
glue 1.3.0 2018-07-17 CRAN (R 3.5.0)
gplots 3.0.1 2016-03-30 CRAN (R 3.5.0)
graphics * 3.5.1 2018-07-05 local
grDevices * 3.5.1 2018-07-05 local
grid 3.5.1 2018-07-05 local
gridExtra 2.3 2017-09-09 cran (@2.3)
gtable 0.2.0 2016-02-26 cran (@0.2.0)
gtools 3.8.1 2018-06-26 CRAN (R 3.5.0)
haven 1.1.2 2018-06-27 CRAN (R 3.5.0)
hdf5r 1.0.1 2018-10-07 CRAN (R 3.5.0)
here * 0.1 2017-05-28 CRAN (R 3.5.0)
Hmisc 4.1-1 2018-01-03 CRAN (R 3.5.0)
hms 0.4.2 2018-03-10 cran (@0.4.2)
htmlTable 1.12 2018-05-26 CRAN (R 3.5.0)
htmltools 0.3.6 2017-04-28 CRAN (R 3.5.0)
htmlwidgets 1.3 2018-09-30 CRAN (R 3.5.0)
httr 1.3.1 2017-08-20 CRAN (R 3.5.0)
ica 1.0-2 2018-05-24 CRAN (R 3.5.0)
igraph 1.2.2 2018-07-27 cran (@1.2.2)
irlba 2.3.2 2018-01-11 CRAN (R 3.5.0)
iterators 1.0.10 2018-07-13 cran (@1.0.10)
jsonlite 1.5 2017-06-01 CRAN (R 3.5.0)
kernlab 0.9-27 2018-08-10 CRAN (R 3.5.0)
KernSmooth 2.23-15 2015-06-29 CRAN (R 3.5.1)
knitr 1.20 2018-02-20 CRAN (R 3.5.0)
labeling 0.3 2014-08-23 cran (@0.3)
lars 1.2 2013-04-24 CRAN (R 3.5.0)
lattice 0.20-35 2017-03-25 CRAN (R 3.5.1)
latticeExtra 0.6-28 2016-02-09 CRAN (R 3.5.0)
lazyeval 0.2.1 2017-10-29 cran (@0.2.1)
lmtest 0.9-36 2018-04-04 CRAN (R 3.5.0)
lsei 1.2-0 2017-10-23 CRAN (R 3.5.0)
lubridate 1.7.4 2018-04-11 CRAN (R 3.5.0)
magrittr 1.5 2014-11-22 CRAN (R 3.5.0)
MASS 7.3-50 2018-04-30 CRAN (R 3.5.1)
Matrix * 1.2-14 2018-04-13 CRAN (R 3.5.1)
mclust 5.4.1 2018-06-27 CRAN (R 3.5.0)
memoise 1.1.0 2017-04-21 CRAN (R 3.5.0)
metap 1.0 2018-07-25 CRAN (R 3.5.0)
methods * 3.5.1 2018-07-05 local
mixtools 1.1.0 2017-03-10 CRAN (R 3.5.0)
modelr 0.1.2 2018-05-11 CRAN (R 3.5.0)
modeltools 0.2-22 2018-07-16 CRAN (R 3.5.0)
munsell 0.5.0 2018-06-12 cran (@0.5.0)
mvtnorm 1.0-8 2018-05-31 CRAN (R 3.5.0)
nlme 3.1-137 2018-04-07 CRAN (R 3.5.1)
nnet 7.3-12 2016-02-02 CRAN (R 3.5.1)
npsurv 0.4-0 2017-10-14 CRAN (R 3.5.0)
parallel 3.5.1 2018-07-05 local
pbapply 1.3-4 2018-01-10 CRAN (R 3.5.0)
pillar 1.3.0 2018-07-14 cran (@1.3.0)
pkgconfig 2.0.2 2018-08-16 cran (@2.0.2)
plyr 1.8.4 2016-06-08 cran (@1.8.4)
png 0.1-7 2013-12-03 CRAN (R 3.5.0)
prabclus 2.2-6 2015-01-14 CRAN (R 3.5.0)
proxy 0.4-22 2018-04-08 CRAN (R 3.5.0)
purrr * 0.2.5 2018-05-29 cran (@0.2.5)
R.methodsS3 1.7.1 2016-02-16 CRAN (R 3.5.0)
R.oo 1.22.0 2018-04-22 CRAN (R 3.5.0)
R.utils 2.7.0 2018-08-27 CRAN (R 3.5.0)
R6 2.2.2 2017-06-17 CRAN (R 3.5.0)
RANN 2.6 2018-07-16 CRAN (R 3.5.0)
RColorBrewer 1.1-2 2014-12-07 cran (@1.1-2)
Rcpp 0.12.19 2018-10-01 CRAN (R 3.5.1)
Rdpack 0.10-1 2018-10-04 CRAN (R 3.5.0)
readr * 1.1.1 2017-05-16 cran (@1.1.1)
readxl 1.1.0 2018-04-20 CRAN (R 3.5.0)
reshape2 1.4.3 2017-12-11 cran (@1.4.3)
reticulate 1.10 2018-08-05 CRAN (R 3.5.0)
rlang 0.2.2 2018-08-16 CRAN (R 3.5.0)
robustbase 0.93-3 2018-09-21 CRAN (R 3.5.0)
ROCR 1.0-7 2015-03-26 CRAN (R 3.5.0)
rpart 4.1-13 2018-02-23 CRAN (R 3.5.1)
rprojroot 1.3-2 2018-01-03 CRAN (R 3.5.0)
rstudioapi 0.7 2017-09-07 CRAN (R 3.5.0)
Rtsne 0.13 2017-04-14 CRAN (R 3.5.0)
rvest 0.3.2 2016-06-17 CRAN (R 3.5.0)
scales 1.0.0 2018-08-09 cran (@1.0.0)
SDMTools 1.1-221 2014-08-05 CRAN (R 3.5.0)
segmented 0.5-3.0 2017-11-30 CRAN (R 3.5.0)
Seurat * 2.3.4 2018-07-17 CRAN (R 3.5.0)
snow 0.4-3 2018-09-14 CRAN (R 3.5.0)
splines 3.5.1 2018-07-05 local
stats * 3.5.1 2018-07-05 local
stats4 3.5.1 2018-07-05 local
stringi 1.2.4 2018-07-20 CRAN (R 3.5.0)
stringr * 1.3.1 2018-05-10 CRAN (R 3.5.0)
survival 2.42-3 2018-04-16 CRAN (R 3.5.1)
tibble * 1.4.2 2018-01-22 cran (@1.4.2)
tidyr * 0.8.1 2018-05-18 cran (@0.8.1)
tidyselect 0.2.4 2018-02-26 cran (@0.2.4)
tidyverse * 1.2.1 2017-11-14 CRAN (R 3.5.0)
tools 3.5.1 2018-07-05 local
trimcluster 0.1-2.1 2018-07-20 CRAN (R 3.5.0)
tsne 0.1-3 2016-07-15 CRAN (R 3.5.0)
utils * 3.5.1 2018-07-05 local
withr 2.1.2 2018-03-15 CRAN (R 3.5.0)
xml2 1.2.0 2018-01-24 CRAN (R 3.5.0)
zoo 1.8-4 2018-09-19 CRAN (R 3.5.0)
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