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Issues list

Cannot read loom files produced by loompy
#66 opened Sep 10, 2020 by MagpiePKU
RunVelocity() uses "data" rather than "counts" matrix
#27 opened Feb 4, 2020 by krejciadam
2
Run UMAP with specific dimension in Velocyto using Seurat
#28 opened Feb 10, 2020 by sikh09
How to set/conserve orig.ident in Seurat objects converted from combined loom files?
#29 opened Feb 13, 2020 by chatterjee89
runVelocity error
#30 opened Feb 19, 2020 by jmzvillarreal
Arrow means
#31 opened Feb 27, 2020 by sikh09
Converting conos object to Seurat fails
#34 opened Apr 6, 2020 by vtosevski
4
show.velocity.on.embedding.cor -error: libgomp: Out of memory allocating
#38 opened Apr 27, 2020 by GhobrialMoheb
1
how to calculate spliced and unspliced counts in seurat object
#39 opened May 11, 2020 by skim245
2
RunALRA - Crashing R/hanging
#50 opened Jun 4, 2020 by TJCooperIL
2
problem in integrating Seurat objects using LIGER
#43 opened Jun 4, 2020 by EDGtentacles
1
Cluster numbering
#44 opened Jun 10, 2020 by visaxena2870
DimProj from RunFastMNN: non-conformable arguments
#25 opened Feb 4, 2020 by dagarfield
4
Error: object ‘IsGlobal’ is not exported by 'namespace:Seurat'
#61 opened Aug 24, 2020 by bansalvi
2
Questions about seurat-wrappers with scVelo
#67 opened Sep 14, 2020 by ghost
Loading RNA and integrated assays with as.cell_data_set()
#73 opened Nov 27, 2020 by LuciaJim
1
RunPrestoAll / Please only specify either assay or reduction / No DE genes identified
#74 opened Dec 10, 2020 by jdime
1
Error: node stack overflow when running scvelo
#76 opened Dec 28, 2020 by Lukadon77
Monocle3 differential expression failed when active.assay is not "RNA"
#77 opened Jan 13, 2021 by Lix1993
4
Unexpected behaviour
#79 opened Feb 10, 2021 by stemangiola
1
velocyto.R spliced/unspliced figures for cluster specific genes with low expression
#82 opened Feb 22, 2021 by RodrigoGM
Missing fastMNN outputs
#83 opened Feb 25, 2021 by bschilder
1
My loom file does not contain spliced and unspliced assays for running velocyto.R
#86 opened Apr 1, 2021 by juhjeong
2
velocyto on 6 samples with integrated seurat obj.
#89 opened Apr 21, 2021 by dmsalsgh97
1
error in scVIIntegration when using SCTransform
#209 opened Dec 28, 2024 by wanghf810501
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