Skip to content

Issues: satijalab/seurat-wrappers

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

84 Open 59 Closed
84 Open 59 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

BANKSY wrapper concerns
#208 opened Dec 20, 2024 by LPotter21
1
[monocle3] Error in converting cell_data_set to Seurat object with function "as.Seurat()"
#207 opened Nov 26, 2024 by jcshuy
Cannot install seurat wrappers or seuratdata
#205 opened Nov 19, 2024 by hviolaphd
How to merge loom info into a Seurat object?
#204 opened Oct 28, 2024 by AndreaYCT
ValueError: Expected more than 1 value per channel when training, got input size torch.Size([1, 128])
#200 opened Sep 19, 2024 by zclecle2
1
Allow specification of Python virtual environment
#199 opened Sep 11, 2024 by Debilski
Unable to open HDF5 file.
#197 opened Aug 9, 2024 by cmullen2-web
Error: No feature overlap between existing object and new layer data
#196 opened Aug 5, 2024 by gizembydmr
1
Warning: Layer counts isn't present in the assay object; returning NULL
#194 opened May 23, 2024 by Noralii
The batch argument for FastMNNIntegration via IntegrateLayers is non-functional
#193 opened May 21, 2024 by erzakiev
Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds
#192 opened May 19, 2024 by FourAlarmFire
IntegrateLayers using FastMNN gives error: 'batch' must be specified if '...' has only one object
#191 opened May 10, 2024 by yesitsjess
2
Error converting Seurat object to cell_data_set, bug fix no longer exists
#189 opened Apr 30, 2024 by azurocha
1
Alra not using Scaled data
#188 opened Apr 9, 2024 by TomLuijts
Temporary Files
#187 opened Apr 4, 2024 by GischD
Warning in install.packages :package ‘SeuratWrappers’ is not available for this version of R
#186 opened Apr 2, 2024 by lmf04
2
Installing in a Conda environment
#183 opened Feb 24, 2024 by gkaf89
negative extents to matrix
#182 opened Feb 18, 2024 by parkjooyoung99
Bug report(?) of adding support to v5
#181 opened Feb 4, 2024 by JerryZhang-1222
Seurat-wrappers intsallation failure
#178 opened Jan 18, 2024 by acaulier
4
Velocyto- Seurat - invalid class “LogMap” object: Duplicate rownames not allowed
#177 opened Jan 12, 2024 by Ruba-Mahmoud
5
Learn_graph error Error: colnames(cds)!=names(cds@clusters[[reduction_method]]$partitions)
#176 opened Jan 11, 2024 by coraolpe
FastMNNIntegration not using "sketch" assay but "RNA" assay
#174 opened Dec 27, 2023 by myshu2017-03-14
Not able to convert loom to seurat
#172 opened Nov 21, 2023 by millerkaplanlab
6
Error in utils
#170 opened Nov 17, 2023 by biotech70
ProTip! Find all open issues with in progress development work with linked:pr.