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# generated docs | ||
docs/_build | ||
docs/source/_format_auto_docs | ||
docs/source/_static | ||
!docs/source/_static/theme_overrides.css | ||
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# copied spec files | ||
src/pynwb/ndx_events/spec/*.yaml | ||
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
wheels/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
MANIFEST | ||
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# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*.cover | ||
.hypothesis/ | ||
.pytest_cache/ | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
local_settings.py | ||
db.sqlite3 | ||
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# Flask stuff: | ||
instance/ | ||
.webassets-cache | ||
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# Scrapy stuff: | ||
.scrapy | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
target/ | ||
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# Jupyter Notebook | ||
.ipynb_checkpoints | ||
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# pyenv | ||
.python-version | ||
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# celery beat schedule file | ||
celerybeat-schedule | ||
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# SageMath parsed files | ||
*.sage.py | ||
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# Environments | ||
.env | ||
.venv | ||
env/ | ||
venv/ | ||
ENV/ | ||
env.bak/ | ||
venv.bak/ | ||
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# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
.mypy_cache/ | ||
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# Mac finder | ||
.DS_Store |
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include LICENSE.txt | ||
include README.md | ||
include requirements.txt | ||
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include spec/*.yaml | ||
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recursive-include tests * | ||
recursive-exclude * __pycache__ | ||
recursive-exclude * *.py[co] | ||
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recursive-include docs *.css *.rst conf.py conf_doc_autogen.py Makefile make.bat README.md |
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# Next Steps for ndx-events Extension for NWB:N | ||
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## Creating Your Extension | ||
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1. In a terminal, change directory into the new ndx-events directory. | ||
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2. Add any packages required by your extension to `requirements.txt` and `setup.py`. | ||
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3. Run `python -m pip install -r requirements.txt` to install the `pynwb` package | ||
and any other packages required by your extension. | ||
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4. Modify `src/create_extension_spec.py` to define your extension. | ||
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- If you want to create any custom classes for interacting with the extension, | ||
add them to the `src/pynwb`. | ||
- If present, the `src/pynwb` folder MUST contain the following: | ||
- `ndx-events` - Folder with the sources of the NWB extension | ||
- `ndx-events/__init__.py` - Python file that may be empty | ||
- If present, the `src/pynwb` folder MAY contain the following files/folders: | ||
- `test` - Folder for unit tests for the extensions | ||
- `jupyter_widgets` - Optional package with custom widgets for use with Jupyter | ||
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5. Run `python src/spec/create_extension_spec.py` to generate the | ||
`spec/ndx-events.namespace.yaml` and | ||
`spec/ndx-events.extensions.yaml` files. | ||
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6. You may need to modify `setup.py` and re-run `python setup.py install` if you | ||
use any dependencies. | ||
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## Documenting and Publishing Your Extension to the Community | ||
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1. Install the latest release of hdmf_docutils: `python -m pip install hdmf-docutils` | ||
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2. Start a git repository for your extension directory ndx-events | ||
and push it to GitHub. You will need a GitHub account. | ||
- Follow these directions: | ||
https://help.github.com/en/articles/adding-an-existing-project-to-github-using-the-command-line | ||
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3. Change directory into `docs`. | ||
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4. Run `make html` to generate documentation for your extension based on the YAML files. | ||
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5. Read `docs/README.md` for instructions on how to customize documentation for | ||
your extension. | ||
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6. Modify `README.md` to describe this extension for interested developers. | ||
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7. Add a license file. Permissive licenses should be used if possible. **A [BSD license](https://opensource.org/licenses/BSD-3-Clause) is recommended.** | ||
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8. Make a release for the extension on GitHub with the version number specified. e.g. if version is 0.1.0, then this page should exist: https://github.com/rly/ndx-events/releases/tag/0.1.0 . For instructions on how to make a release on GitHub see [here](https://help.github.com/en/github/administering-a-repository/creating-releases). | ||
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9. Publish your updated extension on PyPi. | ||
- Follow these directions: https://packaging.python.org/tutorials/packaging-projects/ | ||
- You may need to modify `setup.py` | ||
- If your extension version is 0.1.0, then this page should exist: https://pypi.org/project/ndx-events/0.1.0 | ||
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Once your GitHub release and ``setup.py`` are ready, publishing on PyPi: | ||
```bash | ||
python setup.py sdist bdist_wheel | ||
twine upload dist/* | ||
``` | ||
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10. Go to https://github.com/nwb-extensions/staged-extensions and fork the | ||
repository. | ||
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11. Clone the fork onto your local filesystem. | ||
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12. Copy the directory `staged-extensions/example` to a new directory | ||
`staged-extensions/ndx-events`: | ||
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```bash | ||
cp -r staged-extensions/example staged-extensions/ndx-events | ||
``` | ||
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13. Edit `staged-extensions/ndx-events/ndx-meta.yaml` | ||
with information on where to find your NWB extension. | ||
- The YAML file MUST contain a dict with the following keys: | ||
- name: extension namespace name | ||
- version: extension version | ||
- src: URL for the main page of the public repository (e.g. on GitHub, BitBucket, GitLab) that contains the sources of the extension | ||
- pip: URL for the main page of the extension on PyPI | ||
- license: name of the license of the extension | ||
- maintainers: list of GitHub | ||
usernames of those who will reliably maintain the extension | ||
- | ||
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You may copy and modify the following YAML that was auto-generated: | ||
```yaml | ||
name: ndx-events | ||
version: 0.1.0 | ||
src: https://github.com/rly/ndx-events | ||
pip: https://pypi.org/project/ndx-events/ | ||
license: BSD 3-Clause | ||
maintainers: | ||
- rly | ||
``` | ||
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14. Edit `staged-extensions/ndx-events/README.md` | ||
to add information about your extension. You may copy it from | ||
`ndx-events/README.md`. | ||
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```bash | ||
cp ndx-events/README.md staged-extensions/ndx-events/README.md | ||
``` | ||
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15. Add and commit your changes to Git and push your changes to GitHub. | ||
``` | ||
cd staged-extensions | ||
git add ndx-events | ||
git commit -m "Add new catalog entry for ndx-events" . | ||
git push | ||
``` | ||
16. Open a pull request. Building of your extension will be tested on Windows, | ||
Mac, and Linux. The technical team will review your extension shortly after | ||
and provide feedback and request changes, if any. | ||
17. When your pull request is merged, a new repository, called | ||
ndx-events-feedstock will be created in the nwb-extensions | ||
GitHub organization and you will be added as a maintainer for that repository. | ||
## Updating Your Published Extension | ||
1. Update your ndx-events GitHub repository. | ||
2. Publish your updated extension on PyPi. | ||
3. Fork the ndx-events-feedstock repository on GitHub. | ||
4. Open a pull request to test the changes automatically. The technical team | ||
will review your changes shortly after and provide feedback and request changes, | ||
if any. | ||
5. Your updated extension is approved. |
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# ndx-events Extension for NWB | ||
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## Installation | ||
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## Usage | ||
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This extension was created using [ndx-template](https://github.com/nwb-extensions/ndx-template). |
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