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Issues list

get_example_data.py downloads a file that is not unzippable
#59 opened Mar 13, 2023 by jf767 updated Mar 15, 2023
3
TractionForceConfig implementation is incompatible with scikit-learn v1.0 and above
#58 opened Jan 13, 2022 by AndreaDimitracopoulos updated Jan 13, 2022
1
ERROR when Running pytraction locally via docker + pip install -e . bug Something isn't working
#57 opened Nov 10, 2021 by AndreaDimitracopoulos updated Nov 10, 2021
@rg314
Small spots of high forces skew results bug Something isn't working enhancement New feature or request
#55 opened Aug 5, 2021 by l-kaplan updated Aug 9, 2021
@rg314
In low contrast/underexposed images FiJi seems to detect forces more robustly enhancement New feature or request
#56 opened Aug 5, 2021 by l-kaplan updated Aug 9, 2021
@rg314
How to filter forces according to ROI
#54 opened Aug 3, 2021 by l-kaplan updated Aug 9, 2021
@rg314
Updating pytraction to later versions
#52 opened Aug 3, 2021 by rg314 updated Aug 3, 2021
@rg314 @l-kaplan
6
MemoryError - Can't process 2048x2048 images
#50 opened Jul 20, 2021 by l-kaplan updated Jul 23, 2021
1
FileNotFoundError: DLL with shapely bug Something isn't working
#29 opened Apr 16, 2021 by rg314 updated Jun 17, 2021
@rg314
2
ImageJ plugin (Java) that links to python API enhancement New feature or request
#45 opened May 6, 2021 by rg314 updated May 6, 2021
@Phlair
1
Simulation of ground truth help wanted Extra attention is needed test tfm
#20 opened Mar 26, 2021 by rg314 updated May 3, 2021
@wolframponisch
8
documentation and tests missing from package documentation Improvements or additions to documentation good first issue Good for newcomers help wanted Extra attention is needed test
#16 opened Mar 21, 2021 by rg314 updated Apr 27, 2021
@Phlair @rg314
4
OpenPIV v0.23.5: piv updated from openpiv
#42 opened Apr 25, 2021 by rg314 updated Apr 25, 2021
@rg314
thread process_stack(img, ref) enhancement New feature or request
#35 opened Apr 20, 2021 by rg314 updated Apr 23, 2021
@Phlair
6
Contributing.md
#37 opened Apr 21, 2021 by rg314 updated Apr 21, 2021
@rg314
training data for cell segmentation computer vision good first issue Good for newcomers
#4 opened Mar 13, 2021 by rg314 updated Apr 21, 2021
@AndreaDimitracopoulos
3
Allow to use a time series as reference image enhancement New feature or request help wanted Extra attention is needed
#36 opened Apr 21, 2021 by AndreaDimitracopoulos updated Apr 21, 2021
[experimental] Segmentation issue bug Something isn't working
#31 opened Apr 20, 2021 by AndreaDimitracopoulos updated Apr 21, 2021
1
RuntimeWarning: Please ensure that the input image has shape (f,c,w,h) the current shape is (1088, 1590) bug Something isn't working enhancement New feature or request
#34 opened Apr 20, 2021 by rg314 updated Apr 20, 2021
@rg314
Example data for multiple image stacks enhancement New feature or request
#32 opened Apr 20, 2021 by AndreaDimitracopoulos updated Apr 20, 2021
1
Usage video as per ZeroCostDL4Mic enhancement New feature or request
#33 opened Apr 20, 2021 by rg314 updated Apr 20, 2021
@AndreaDimitracopoulos @AkiStubb @omerwagner
POC testing help wanted Extra attention is needed
#19 opened Mar 26, 2021 by rg314 updated Apr 20, 2021
@AndreaDimitracopoulos @rg314 @AkiStubb
11
MemoryError: Unable to allocate 91.6 GiB for an array with shape (78408, 78408) and data type complex128 bug Something isn't working
#30 opened Apr 16, 2021 by AndreaDimitracopoulos updated Apr 19, 2021
11
create examples notebook with different use case
#26 opened Apr 12, 2021 by rg314 updated Apr 13, 2021
@AndreaDimitracopoulos
2
Example stacks used in usage.ipynb should be smaller (fewer images per stack) enhancement New feature or request
#25 opened Apr 11, 2021 by AndreaDimitracopoulos updated Apr 12, 2021
@rg314
3
ProTip! no:milestone will show everything without a milestone.