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training data for cell segmentation #4

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rg314 opened this issue Mar 13, 2021 · 3 comments
Open

training data for cell segmentation #4

rg314 opened this issue Mar 13, 2021 · 3 comments
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@AndreaDimitracopoulos
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computer vision good first issue Good for newcomers

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rg314 commented Mar 13, 2021

We need some training data to enable automatic cell segmentation

  1. Cancer cells from Aki
  2. Cells from @andimi
  3. Axons from @rg314

This can either be a polygon or masked image.
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rg314 commented Mar 21, 2021

See more details for training in #2

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rg314 commented Apr 21, 2021

Aki suggested using the cellpose python API instead that is very good a segmentation. @andimi it would be nice to have a python API for your modification of cellpose ;)

@rg314 rg314 mentioned this issue Apr 21, 2021
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Aki suggested using the cellpose python API instead that is very good a segmentation. @andimi it would be nice to have a python API for your modification of cellpose ;)

Yes, ideally we'll have a web API that can be called without the need of installing any more packages.

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