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Merged
merged 12 commits into from
Oct 23, 2017
Merged

Partial #2237 #2368

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cc97e89
fix calls to system_call and ebi submissions
antgonza Oct 12, 2017
292e193
fixing errors
antgonza Oct 12, 2017
6a553f6
fix if state == submitting:
antgonza Oct 12, 2017
f27c230
just raise error
antgonza Oct 12, 2017
d721f85
EBISubmissionError -> ComputeError
antgonza Oct 12, 2017
9e10d9c
Merge pull request #2345 from biocore/fix-ebi-1012
josenavas Oct 14, 2017
691ba3d
Fixing merge conflicts
josenavas Oct 20, 2017
259cbe3
Merge branch 'dev' of https://github.com/biocore/qiita into dev
josenavas Oct 20, 2017
bb0772f
Sorting values
josenavas Oct 20, 2017
4feaf8a
Merge branch 'dev' of https://github.com/biocore/qiita into partial-2237
josenavas Oct 20, 2017
55331a9
Case insensitive sorting
josenavas Oct 20, 2017
9fb4d33
Addressing @ElDeveloper's comments
josenavas Oct 23, 2017
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EBISubmissionError -> ComputeError
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@antgonza
antgonza committed Oct 12, 2017
commit d721f85caf690bbe7f309c9e45aa6a748c4fa5a5
4 changes: 2 additions & 2 deletions qiita_ware/commands.py
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Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@ def submit_EBI(preprocessed_data_id, action, send):
if rv != 0:
error_msg = ("Error:\nStd output:%s\nStd error:%s" % (
stdout, stderr))
raise EBISubmissionError(error_msg)
raise ComputeError(error_msg)
open(ebi_submission.ascp_reply, 'a').write(
'stdout:\n%s\n\nstderr: %s' % (stdout, stderr))
environ['ASPERA_SCP_PASS'] = old_ascp_pass
Expand All @@ -84,7 +84,7 @@ def submit_EBI(preprocessed_data_id, action, send):
if rv != 0:
error_msg = ("Error:\nStd output:%s\nStd error:%s" % (
xml_content, stderr))
raise EBISubmissionError(error_msg)
raise ComputeError(error_msg)
else:
LogEntry.create('Runtime',
('Submission of sequences of pre_processed_id: '
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